/usr/include/blasr/algorithms/alignment/ScoreMatrices.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | #ifndef _BLASR_SCORE_MATRICES_HPP_
#define _BLASR_SCORE_MATRICES_HPP_
extern int QVDistanceMatrix[5][5];
extern int EditDistanceMatrix[5][5];
extern int SMRTDistanceMatrix[5][5];
extern int SMRTLogProbMatrix[5][5];
extern int LowMutationMatrix[5][5];
extern int LocalAlignLowMutationMatrix[5][5];
extern int CrossMatchMatrix[5][5];
#endif // _BLASR_SCORE_MATRICES_HPP_
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