/usr/include/blasr/files/CCSIterator.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | #ifndef _BLASR_BASE_CCS_ITERATOR_HPP_
#define _BLASR_BASE_CCS_ITERATOR_HPP_
#include "CCSSequence.hpp"
class CCSIterator {
public:
CCSSequence *seqPtr;
int curPass;
int numPasses;
virtual void Initialize(CCSSequence *_seqPtr);
virtual int GetNext(int &direction, int &startBase, int &numBases);
void Reset();
int GetNumPasses();
};
#endif
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