/usr/include/blasr/format/CompareSequencesPrinter.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | #ifndef _BLASR_COMPARE_SEQUENCES_PRINTER_HPP_
#define _BLASR_COMPARE_SEQUENCES_PRINTER_HPP_
#include <fstream>
#include <iostream>
#include "algorithms/alignment/AlignmentUtils.hpp"
namespace CompareSequencesOutput{
void PrintHeader(std::ostream &out);
template<typename T_Alignment, typename T_QuerySequence, typename T_TargetSequence>
void Print(T_Alignment &alignment,
T_QuerySequence &qseq, T_TargetSequence &tseq,
std::ostream &out, bool refForward=true);
}
#include "CompareSequencesPrinterImpl.hpp"
#endif
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