/usr/include/blasr/tuples/TupleCountTable.hpp is in libblasr-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | #ifndef _BLASR_TUPLE_COUNT_TABLE_HPP_
#define _BLASR_TUPLE_COUNT_TABLE_HPP_
#include <algorithm>
#include <fstream>
#include <iostream>
#include <assert.h>
#include "tuples/TupleMetrics.hpp"
using namespace std;
template<typename TSequence, typename TTuple>
class TupleCountTable {
public:
int *countTable;
int countTableLength;
int nTuples;
TupleMetrics tm;
bool deleteStructures;
void InitCountTable(TupleMetrics &ptm);
TupleCountTable();
~TupleCountTable();
void Free();
void IncrementCount(TTuple &tuple);
void AddSequenceTupleCountsLR(TSequence &seq);
void Write(ofstream &out);
void Read(ifstream &in);
};
#include "tuples/TupleCountTableImpl.hpp"
#endif
|