/usr/include/cbf/cbf_file.h is in libcbf-dev 0.9.2.2-1.
This file is owned by root:root, with mode 0o644.
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* cbf_file.h *
* *
* Version 0.7.6 14 July 2006 *
* *
* Paul Ellis and *
* Herbert J. Bernstein (yaya@bernstein-plus-sons.com) *
* *
* (C) Copyright 2006 Herbert J. Bernstein *
* *
**********************************************************************/
/**********************************************************************
* *
* YOU MAY REDISTRIBUTE THE CBFLIB PACKAGE UNDER THE TERMS OF THE GPL *
* *
* ALTERNATIVELY YOU MAY REDISTRIBUTE THE CBFLIB API UNDER THE TERMS *
* OF THE LGPL *
* *
**********************************************************************/
/*************************** GPL NOTICES ******************************
* *
* This program is free software; you can redistribute it and/or *
* modify it under the terms of the GNU General Public License as *
* published by the Free Software Foundation; either version 2 of *
* (the License, or (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program; if not, write to the Free Software *
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA *
* 02111-1307 USA *
* *
**********************************************************************/
/************************* LGPL NOTICES *******************************
* *
* This library is free software; you can redistribute it and/or *
* modify it under the terms of the GNU Lesser General Public *
* License as published by the Free Software Foundation; either *
* version 2.1 of the License, or (at your option) any later version. *
* *
* This library is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU *
* Lesser General Public License for more details. *
* *
* You should have received a copy of the GNU Lesser General Public *
* License along with this library; if not, write to the Free *
* Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, *
* MA 02110-1301 USA *
* *
**********************************************************************/
/**********************************************************************
* *
* Stanford University Notices *
* for the CBFlib software package that incorporates SLAC software *
* on which copyright is disclaimed *
* *
* This software *
* ------------- *
* The term Ôthis softwareÕ, as used in these Notices, refers to *
* those portions of the software package CBFlib that were created by *
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* Acknowledgement of sponsorship *
* ------------------------------ *
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* ---------------------- *
* In the interest of clarity regarding the origin and status of this *
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**********************************************************************/
/**********************************************************************
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* The IUCr Policy *
* for the Protection and the Promotion of the STAR File and *
* CIF Standards for Exchanging and Archiving Electronic Data *
* *
* Overview *
* *
* The Crystallographic Information File (CIF)[1] is a standard for *
* information interchange promulgated by the International Union of *
* Crystallography (IUCr). CIF (Hall, Allen & Brown, 1991) is the *
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* more general STAR File[2] format. The CIF and STAR File approaches *
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* Statement of intent *
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* Protection of the standards *
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* Glossary of terms *
* *
* [1] CIF: is a data file conformant to the file syntax defined *
* at http://www.iucr.org/iucr-top/cif/spec/index.html *
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* [2] STAR File: is a data file conformant to the file syntax *
* defined at http://www.iucr.org/iucr-top/cif/spec/star/index.html *
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* http://www.iucr.org/iucr-top/cif/spec/ddl/index.html *
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* Last modified: 30 September 2000 *
* *
* IUCr Policy Copyright (C) 2000 International Union of *
* Crystallography *
**********************************************************************/
#ifndef CBF_FILE_H
#define CBF_FILE_H
#ifdef __cplusplus
extern "C" {
#endif
#include <stdio.h>
#include "global.h"
#include "md5.h"
/* File structure */
typedef struct
{
FILE *stream; /* File pointer */
FILE *logfile; /* NULL or an active stream for error logging */
int errors; /* logged error messages */
int warnings; /* logged warnings */
unsigned int connections; /* Number of pointers to this structure */
int temporary; /* Flag for temporary file (memres) */
int bits [2]; /* Buffer for bitwise reads and writes */
char *characters; /* Buffer for character writes */
char *characters_base; /* Buffer for character memres file */
size_t characters_size; /* Size of the buffer for character writes*/
size_t characters_used; /* Characters in the character buffer */
int last_read; /* The last character read */
unsigned int line; /* Current line */
unsigned int column; /* Current column */
unsigned int columnlimit; /* Ascii line column limit (80 or 2048) */
char *buffer; /* Buffer */
size_t buffer_size; /* Size of the buffer */
size_t buffer_used; /* Number in use */
int read_headers; /* message digest control (read) */
int write_headers; /* message digest and header type (write) */
int write_encoding; /* encoding and line terminations (write) */
MD5_CTX *digest; /* message digest context */
}
cbf_file;
/* Create and initialise a file */
int cbf_make_file (cbf_file **file, FILE *stream);
/* Create and initialise a wide file */
int cbf_make_widefile (cbf_file **file, FILE *stream);
/* Free a file */
int cbf_free_file (cbf_file **file);
/* Add a file connection */
int cbf_add_fileconnection (cbf_file **file, FILE *stream);
/* Remove a connection */
int cbf_delete_fileconnection (cbf_file **file);
/* Count the connections */
int cbf_file_connections (cbf_file *file);
/* Set the size of an input/output buffer */
int cbf_set_io_buffersize (cbf_file *file, size_t size);
/* Set the size of an output buffer */
int cbf_set_buffersize (cbf_file *file, size_t size);
/* Empty the buffer */
int cbf_reset_buffer (cbf_file *file);
/* Add a character to the buffer */
int cbf_save_character (cbf_file *file, int c);
/* Add a character to the buffer, trimming trailing spaces */
int cbf_save_character_trim (cbf_file *file, int c);
/* Add a character to the buffer at a given position */
int cbf_save_character_at (cbf_file *file, int c, size_t position);
/* Retrieve the buffer */
int cbf_get_buffer (cbf_file *file, const char **buffer,
size_t *buffer_size);
/* Get the file coordinates */
int cbf_get_filecoordinates (cbf_file *file, unsigned int *line,
unsigned int *column);
/* Set the file coordinates */
int cbf_set_filecoordinates (cbf_file *file, unsigned int line,
unsigned int column);
/* Read the next bit */
int cbf_get_bit (cbf_file *file);
/* Read the next bits (signed) */
int cbf_get_bits (cbf_file *file, int *bitslist, int bitcount);
/* Write bits */
int cbf_put_bits (cbf_file *file, int *bitslist, int bitcount);
/* Read an integer as a series of bits */
int cbf_get_integer (cbf_file *file, int *val, int valsign, int bitcount);
/* Write an integer as a series of bits */
int cbf_put_integer (cbf_file *file, int val, int valsign, int bitcount);
/* Initialize a message digest */
int cbf_start_digest (cbf_file *file);
/* Get the message digest */
int cbf_end_digest (cbf_file *file, char *digest);
/* Discard any bits in the buffers */
int cbf_reset_bits (cbf_file *file);
/* Discard any bits in the input buffers */
int cbf_reset_in_bits (cbf_file *file);
/* Discard any characters in the character buffers */
int cbf_reset_characters (cbf_file *file);
/* Flush any remaining bits (write) */
int cbf_flush_bits (cbf_file *file);
/* Flush the character buffer (write) */
int cbf_flush_characters (cbf_file *file);
/* Set output buffer size */
int cbf_set_output_buffersize (cbf_file *file, size_t size);
/* Get the next character */
int cbf_get_character (cbf_file *file);
/* Read the next character (convert end-of-line and update line and column) */
int cbf_read_character (cbf_file *file);
/* Put the next character */
int cbf_put_character (cbf_file *file, int c);
/* Write the next character (convert end-of-line and update line and column) */
int cbf_write_character (cbf_file *file, int c);
/* Put a string */
int cbf_put_string (cbf_file *file, const char *string);
/* Write a string (convert end-of-line and update line and column) */
int cbf_write_string (cbf_file *file, const char *string);
/* Read a (CR/LF)-terminated line into the buffer */
int cbf_read_line (cbf_file *file, const char **line);
/* Read nelem characters into the buffer */
int cbf_get_block (cbf_file *file, size_t nelem);
/* Write nelem characters from the buffer */
int cbf_put_block (cbf_file *file, size_t nelem);
/* Copy characters between files */
int cbf_copy_file (cbf_file *destination, cbf_file *source, size_t nelem);
/* Get the file position */
int cbf_get_fileposition (cbf_file *file, long int *position);
/* Set the file position */
int cbf_set_fileposition (cbf_file *file, long int position, int whence);
#ifdef __cplusplus
}
#endif
#endif /* CBF_FILE_H */
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