This file is indexed.

/usr/include/CGAL/Sphere_3.h is in libcgal-dev 4.7-4.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
// Copyright (c) 1999  
// Utrecht University (The Netherlands),
// ETH Zurich (Switzerland),
// INRIA Sophia-Antipolis (France),
// Max-Planck-Institute Saarbruecken (Germany),
// and Tel-Aviv University (Israel).  All rights reserved. 
//
// This file is part of CGAL (www.cgal.org); you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 3 of the License,
// or (at your option) any later version.
//
// Licensees holding a valid commercial license may use this file in
// accordance with the commercial license agreement provided with the software.
//
// This file is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
// WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
//
// $URL$
// $Id$
//
//
// Author(s)     : Stefan Schirra

#ifndef CGAL_SPHERE_3_H
#define CGAL_SPHERE_3_H

#include <CGAL/assertions.h>
#include <boost/type_traits/is_same.hpp>
#include <CGAL/Kernel/Return_base_tag.h>
#include <CGAL/Bbox_3.h>
#include <CGAL/representation_tags.h>
#include <CGAL/Dimension.h>

namespace CGAL {

template <class R_>
class Sphere_3 : public R_::Kernel_base::Sphere_3
{
  typedef typename R_::FT                    FT;
// http://doc.cgal.org/latest/Manual/devman_code_format.html#secprogramming_conventions
  typedef typename R_::Point_3               Point_3_;
  typedef typename R_::Circle_3              Circle_3;
  typedef typename R_::Aff_transformation_3  Aff_transformation_3;

  typedef Sphere_3                           Self;
  CGAL_static_assertion((boost::is_same<Self, typename R_::Sphere_3>::value));

public:

  typedef Dimension_tag<3>  Ambient_dimension;
  typedef Dimension_tag<2>  Feature_dimension;

  typedef typename R_::Kernel_base::Sphere_3  Rep;

  const Rep& rep() const
  {
    return *this;
  }

  Rep& rep()
  {
    return *this;
  }

  typedef          R_                       R;

  Sphere_3() {}

  Sphere_3(const Rep& s)
   : Rep(s) {}

  Sphere_3(const Point_3_& p, const FT& sq_rad,
           const Orientation& o = COUNTERCLOCKWISE)
   : Rep(typename R::Construct_sphere_3()(Return_base_tag(), p, sq_rad, o)) {}

  Sphere_3(const Point_3_& p, const Point_3_& q,
           const Point_3_& r, const Point_3_& u)
   : Rep(typename R::Construct_sphere_3()(Return_base_tag(), p, q, r, u)) {}

  Sphere_3(const Point_3_& p, const Point_3_& q, const Point_3_& r,
           const Orientation& o = COUNTERCLOCKWISE)
   : Rep(typename R::Construct_sphere_3()(Return_base_tag(), p, q, r, o)) {}

  Sphere_3(const Point_3_& p, const Point_3_&  q,
           const Orientation& o = COUNTERCLOCKWISE)
   : Rep(typename R::Construct_sphere_3()(Return_base_tag(), p, q, o)) {}

  explicit Sphere_3(const Point_3_& p, const Orientation& o = COUNTERCLOCKWISE)
   : Rep(typename R::Construct_sphere_3()(Return_base_tag(), p, o)) {}

  explicit Sphere_3(const Circle_3& c)
   : Rep(typename R::Construct_sphere_3()(c)) {}

  Sphere_3 orthogonal_transform(const Aff_transformation_3 &t) const;

  typename cpp11::result_of<typename R::Construct_center_3( Sphere_3)>::type
  center() const
  {
    return R().construct_center_3_object()(*this);
  }

  FT
  squared_radius() const
  {
    return R().compute_squared_radius_3_object()(*this);
  }

  // Returns a circle with opposite orientation
  Sphere_3 opposite() const
  {
    return R().construct_opposite_sphere_3_object()(*this);
  }

  typename R::Orientation orientation() const
  {
    return R().orientation_3_object()(*this);
  }

  typename R::Bounded_side
  bounded_side(const Point_3_ &p) const
  {
    return R().bounded_side_3_object()(*this, p);
  }

  typename R::Oriented_side
  oriented_side(const Point_3_ &p) const
  {
    return R().oriented_side_3_object()(*this, p);
  }

  typename R::Boolean
  has_on(const Point_3_ &p) const
  {
    return R().has_on_3_object()(*this, p);
  }  

  typename R::Boolean
  has_on(const Circle_3 &c) const
  {
    return R().has_on_3_object()(*this, c);
  }
  
  typename R::Boolean
  has_on_boundary(const Point_3_ &p) const
  {
    return R().has_on_boundary_3_object()(*this, p);
    //return bounded_side(p) == ON_BOUNDARY;
  }

  typename R::Boolean
  has_on_bounded_side(const Point_3_ &p) const
  {
    return bounded_side(p) == ON_BOUNDED_SIDE;
  }

  typename R::Boolean
  has_on_unbounded_side(const Point_3_ &p) const
  {
    return bounded_side(p) == ON_UNBOUNDED_SIDE;
  }

  typename R::Boolean
  has_on_negative_side(const Point_3_ &p) const
  {
    if (orientation() == COUNTERCLOCKWISE)
      return has_on_unbounded_side(p);
    return has_on_bounded_side(p);
  }

  typename R::Boolean
  has_on_positive_side(const Point_3_ &p) const
  {
    if (orientation() == COUNTERCLOCKWISE)
      return has_on_bounded_side(p);
    return has_on_unbounded_side(p);
  }

  typename R::Boolean
  is_degenerate() const
  {
    return R().is_degenerate_3_object()(*this);
    //return CGAL_NTS is_zero(squared_radius());
  }

  Bbox_3
  bbox() const
  {
    return R().construct_bbox_3_object()(*this);
  }

};

template <class R_>
Sphere_3<R_>
Sphere_3<R_>::
orthogonal_transform(const typename R_::Aff_transformation_3& t) const
{
    typedef typename  R_::RT  RT;
    typedef typename  R_::FT  FT;
    typedef typename  R_::Vector_3  Vector_3;

    // FIXME: precond: t.is_orthogonal() (*UNDEFINED*)
    Vector_3 vec(RT(1), RT(0), RT(0));        // unit vector
    vec = vec.transform(t);                   // transformed
    FT sq_scale = vec.squared_length();       // squared scaling factor

    return Sphere_3(t.transform(this->center()),
                    sq_scale * this->squared_radius(),
                    t.is_even() ? this->orientation()
                                : CGAL::opposite(this->orientation()));
}


template <class R >
std::ostream&
insert(std::ostream& os, const Sphere_3<R>& c,const Cartesian_tag&)
{
    switch(os.iword(IO::mode)) {
    case IO::ASCII :
        os << c.center() << ' ' << c.squared_radius() << ' '
           << static_cast<int>(c.orientation());
        break;
    case IO::BINARY :
        os << c.center();
        write(os, c.squared_radius());
        write(os, static_cast<int>(c.orientation()));
        break;
    default:
        os << "SphereC3(" << c.center() <<  ", " << c.squared_radius();
        switch (c.orientation()) {
        case CLOCKWISE:
            os << ", clockwise)";
            break;
        case COUNTERCLOCKWISE:
            os << ", counterclockwise)";
            break;
        default:
            os << ", collinear)";
            break;
        }
        break;
    }
    return os;
}

template <class R >
std::ostream&
insert(std::ostream& os, const Sphere_3<R>& c, const Homogeneous_tag&)
{
    switch(os.iword(IO::mode)) {
    case IO::ASCII :
        os << c.center() << ' ' << c.squared_radius() << ' '
           << static_cast<int>(c.orientation());
        break;
    case IO::BINARY :
        os << c.center();
        write(os, c.squared_radius());
        write(os, static_cast<int>(c.orientation()));
        break;
    default:
        os << "SphereH3(" << c.center() <<  ", " << c.squared_radius();
        switch (c.orientation()) {
        case CLOCKWISE:
            os << ", clockwise)";
            break;
        case COUNTERCLOCKWISE:
            os << ", counterclockwise)";
            break;
        default:
            os << ", collinear)";
            break;
        }
        break;
    }
    return os;
}

template < class R >
std::ostream&
operator<<(std::ostream& os, const Sphere_3<R>& c)
{
  return insert(os, c, typename R::Kernel_tag() );
}


template <class R >
std::istream&
extract(std::istream& is, Sphere_3<R>& c, const Cartesian_tag&)
{
    typename R::Point_3 center;
    typename R::FT squared_radius;
    int o=0;
    switch(is.iword(IO::mode)) {
    case IO::ASCII :
        is >> center >> squared_radius >> o;
        break;
    case IO::BINARY :
        is >> center;
        read(is, squared_radius);
        is >> o;
        break;
    default:
        std::cerr << "" << std::endl;
        std::cerr << "Stream must be in ascii or binary mode" << std::endl;
        break;
    }
    if (is)
        c = Sphere_3<R>(center, squared_radius, static_cast<Orientation>(o));
    return is;
}


template <class R >
std::istream&
extract(std::istream& is, Sphere_3<R>& c, const Homogeneous_tag&)
{
    typename R::Point_3 center;
    typename R::FT squared_radius;
    int o;
    switch(is.iword(IO::mode)) {
    case IO::ASCII :
        is >> center >> squared_radius >> o;
        break;
    case IO::BINARY :
        is >> center;
        read(is, squared_radius);
        is >> o;
        break;
    default:
        std::cerr << "" << std::endl;
        std::cerr << "Stream must be in ascii or binary mode" << std::endl;
        break;
    }
    if (is)
        c = Sphere_3<R>(center, squared_radius, static_cast<Orientation>(o));
    return is;
}

template < class R >
std::istream&
operator>>(std::istream& is, Sphere_3<R>& c)
{
  return extract(is, c, typename R::Kernel_tag() );
}

} //namespace CGAL

#endif // CGAL_SPHERE_3_H