This file is indexed.

/usr/include/clustalo/clustal-omega-config.h is in libclustalo-dev 1.2.1-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
#ifndef _SRC_CLUSTAL_OMEGA_CONFIG_H
#define _SRC_CLUSTAL_OMEGA_CONFIG_H 1
 
/* src/clustal-omega-config.h. Generated automatically at end of configure. */
/* src/config.h.  Generated from config.h.in by configure.  */
/* src/config.h.in.  Generated from configure.ac by autoheader.  */

/* Define if building universal (internal helper macro) */
/* #undef AC_APPLE_UNIVERSAL_BUILD */

/* Let all files know they are being used inside Clustal Omega */
#ifndef CLUSTAL_OMEGA_CLUSTALO
#define CLUSTAL_OMEGA_CLUSTALO 1
#endif

/* This is a CYGWIN system */
/* #undef CYGWIN */

/* This is a Darwin system */
/* #undef DARWIN */

/* Define to 1 if you have the <argtable2.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_ARGTABLE2_H
#define CLUSTAL_OMEGA_HAVE_ARGTABLE2_H 1
#endif

/* Define to 1 if you have the <assert.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_ASSERT_H
#define CLUSTAL_OMEGA_HAVE_ASSERT_H 1
#endif

/* Define to 1 if you have the <ctype.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_CTYPE_H
#define CLUSTAL_OMEGA_HAVE_CTYPE_H 1
#endif

/* Define to 1 if you have the <dlfcn.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_DLFCN_H
#define CLUSTAL_OMEGA_HAVE_DLFCN_H 1
#endif

/* Define to 1 if you have the <float.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_FLOAT_H
#define CLUSTAL_OMEGA_HAVE_FLOAT_H 1
#endif

/* Define to 1 if you have the `fseek64' function. */
/* #undef HAVE_FSEEK64 */

/* Define to 1 if you have the `fseeko' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FSEEKO
#define CLUSTAL_OMEGA_HAVE_FSEEKO 1
#endif

/* Define to 1 if you have the `fseeko64' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FSEEKO64
#define CLUSTAL_OMEGA_HAVE_FSEEKO64 1
#endif

/* Define to 1 if you have the `ftell64' function. */
/* #undef HAVE_FTELL64 */

/* Define to 1 if you have the `ftello' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FTELLO
#define CLUSTAL_OMEGA_HAVE_FTELLO 1
#endif

/* Define to 1 if you have the `ftello64' function. */
#ifndef CLUSTAL_OMEGA_HAVE_FTELLO64
#define CLUSTAL_OMEGA_HAVE_FTELLO64 1
#endif

/* Define to 1 if you have the <inttypes.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_INTTYPES_H
#define CLUSTAL_OMEGA_HAVE_INTTYPES_H 1
#endif

/* Define to 1 if you have the `argtable2' library (-largtable2). */
#ifndef CLUSTAL_OMEGA_HAVE_LIBARGTABLE2
#define CLUSTAL_OMEGA_HAVE_LIBARGTABLE2 1
#endif

/* Define to 1 if you have the `m' library (-lm). */
#ifndef CLUSTAL_OMEGA_HAVE_LIBM
#define CLUSTAL_OMEGA_HAVE_LIBM 1
#endif

/* Define to 1 if you have the <limits.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_LIMITS_H
#define CLUSTAL_OMEGA_HAVE_LIMITS_H 1
#endif

/* Has log2() */
#ifndef CLUSTAL_OMEGA_HAVE_LOG2
#define CLUSTAL_OMEGA_HAVE_LOG2 1
#endif

/* Define to 1 if you have the <math.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_MATH_H
#define CLUSTAL_OMEGA_HAVE_MATH_H 1
#endif

/* Define to 1 if you have the <memory.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_MEMORY_H
#define CLUSTAL_OMEGA_HAVE_MEMORY_H 1
#endif

/* Define to 1 if you have the `ntohl' function. */
#ifndef CLUSTAL_OMEGA_HAVE_NTOHL
#define CLUSTAL_OMEGA_HAVE_NTOHL 1
#endif

/* Define to 1 if you have the `ntohs' function. */
#ifndef CLUSTAL_OMEGA_HAVE_NTOHS
#define CLUSTAL_OMEGA_HAVE_NTOHS 1
#endif

/* Define to 1 if you have the `ntonl' function. */
/* #undef HAVE_NTONL */

/* Define to 1 if you have the `ntons' function. */
/* #undef HAVE_NTONS */

/* Defined if OpenMP should and can be used */
#ifndef CLUSTAL_OMEGA_HAVE_OPENMP
#define CLUSTAL_OMEGA_HAVE_OPENMP 1
#endif

/* Define to 1 if you have the <stdarg.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDARG_H
#define CLUSTAL_OMEGA_HAVE_STDARG_H 1
#endif

/* Define to 1 if you have the <stdint.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDINT_H
#define CLUSTAL_OMEGA_HAVE_STDINT_H 1
#endif

/* Define to 1 if you have the <stdio.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDIO_H
#define CLUSTAL_OMEGA_HAVE_STDIO_H 1
#endif

/* Define to 1 if you have the <stdlib.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STDLIB_H
#define CLUSTAL_OMEGA_HAVE_STDLIB_H 1
#endif

/* Define to 1 if you have the <strings.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STRINGS_H
#define CLUSTAL_OMEGA_HAVE_STRINGS_H 1
#endif

/* Define to 1 if you have the <string.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_STRING_H
#define CLUSTAL_OMEGA_HAVE_STRING_H 1
#endif

/* Define to 1 if you have the `stroul' function. */
/* #undef HAVE_STROUL */

/* Define to 1 if you have the `strtoull' function. */
#ifndef CLUSTAL_OMEGA_HAVE_STRTOULL
#define CLUSTAL_OMEGA_HAVE_STRTOULL 1
#endif

/* Define to 1 if you have the <sys/stat.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_SYS_STAT_H
#define CLUSTAL_OMEGA_HAVE_SYS_STAT_H 1
#endif

/* Define to 1 if you have the <sys/types.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_SYS_TYPES_H
#define CLUSTAL_OMEGA_HAVE_SYS_TYPES_H 1
#endif

/* Define to 1 if you have the <time.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_TIME_H
#define CLUSTAL_OMEGA_HAVE_TIME_H 1
#endif

/* Define to 1 if you have the <unistd.h> header file. */
#ifndef CLUSTAL_OMEGA_HAVE_UNISTD_H
#define CLUSTAL_OMEGA_HAVE_UNISTD_H 1
#endif

/* This is a LINUX system */
#ifndef CLUSTAL_OMEGA_LINUX
#define CLUSTAL_OMEGA_LINUX 1
#endif

/* Define to the sub-directory in which libtool stores uninstalled libraries.
   */
#ifndef CLUSTAL_OMEGA_LT_OBJDIR
#define CLUSTAL_OMEGA_LT_OBJDIR ".libs/"
#endif

/* This is a MinGW system */
/* #undef MINGW */

/* No-debug Mode */
#ifndef CLUSTAL_OMEGA_NDEBUG
#define CLUSTAL_OMEGA_NDEBUG /**/
#endif

/* Some strange OS */
/* #undef OTHEROS */

/* Name of package */
#ifndef CLUSTAL_OMEGA_PACKAGE
#define CLUSTAL_OMEGA_PACKAGE "clustal-omega"
#endif

/* Define to the address where bug reports for this package should be sent. */
#ifndef CLUSTAL_OMEGA_PACKAGE_BUGREPORT
#define CLUSTAL_OMEGA_PACKAGE_BUGREPORT "clustalw@ucd.ie"
#endif

/* The package code name */
#ifndef CLUSTAL_OMEGA_PACKAGE_CODENAME
#define CLUSTAL_OMEGA_PACKAGE_CODENAME "AndreaGiacomo"
#endif

/* Define to the full name of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_NAME
#define CLUSTAL_OMEGA_PACKAGE_NAME "Clustal Omega"
#endif

/* Define to the full name and version of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_STRING
#define CLUSTAL_OMEGA_PACKAGE_STRING "Clustal Omega 1.2.1"
#endif

/* Define to the one symbol short name of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_TARNAME
#define CLUSTAL_OMEGA_PACKAGE_TARNAME "clustal-omega"
#endif

/* Define to the home page for this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_URL
#define CLUSTAL_OMEGA_PACKAGE_URL ""
#endif

/* Define to the version of this package. */
#ifndef CLUSTAL_OMEGA_PACKAGE_VERSION
#define CLUSTAL_OMEGA_PACKAGE_VERSION "1.2.1"
#endif

/* The size of `fpos_t', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_FPOS_T
#define CLUSTAL_OMEGA_SIZEOF_FPOS_T 16
#endif

/* The size of `unsigned int', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_INT 4
#endif

/* The size of `unsigned long', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG 8
#endif

/* The size of `unsigned long long', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_LONG_LONG 8
#endif

/* The size of `unsigned short', as computed by sizeof. */
#ifndef CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT
#define CLUSTAL_OMEGA_SIZEOF_UNSIGNED_SHORT 2
#endif

/* This is a Solaris system */
/* #undef SOLARIS */

/* This is a BSD system */
/* #undef SOMEBSD */

/* Define to 1 if you have the ANSI C header files. */
#ifndef CLUSTAL_OMEGA_STDC_HEADERS
#define CLUSTAL_OMEGA_STDC_HEADERS 1
#endif

/* Enable extensions on AIX 3, Interix.  */
#ifndef _ALL_SOURCE
# define _ALL_SOURCE 1
#endif
/* Enable GNU extensions on systems that have them.  */
#ifndef _GNU_SOURCE
# define _GNU_SOURCE 1
#endif
/* Enable threading extensions on Solaris.  */
#ifndef _POSIX_PTHREAD_SEMANTICS
# define _POSIX_PTHREAD_SEMANTICS 1
#endif
/* Enable extensions on HP NonStop.  */
#ifndef _TANDEM_SOURCE
# define _TANDEM_SOURCE 1
#endif
/* Enable general extensions on Solaris.  */
#ifndef __EXTENSIONS__
# define __EXTENSIONS__ 1
#endif


/* Version number of package */
#ifndef CLUSTAL_OMEGA_VERSION
#define CLUSTAL_OMEGA_VERSION "1.2.1"
#endif

/* Define if using the dmalloc debugging malloc package */
/* #undef WITH_DMALLOC */

/* Define WORDS_BIGENDIAN to 1 if your processor stores words with the most
   significant byte first (like Motorola and SPARC, unlike Intel). */
#if defined AC_APPLE_UNIVERSAL_BUILD
# if defined __BIG_ENDIAN__
#  define WORDS_BIGENDIAN 1
# endif
#else
# ifndef WORDS_BIGENDIAN
/* #  undef WORDS_BIGENDIAN */
# endif
#endif

/* Define to 1 if on MINIX. */
/* #undef _MINIX */

/* Define to 2 if the system does not provide POSIX.1 features except with
   this defined. */
/* #undef _POSIX_1_SOURCE */

/* Define to 1 if you need to in order for `stat' and other things to work. */
/* #undef _POSIX_SOURCE */

/* Define to empty if `const' does not conform to ANSI C. */
/* #undef const */

/* Define to `__inline__' or `__inline' if that's what the C compiler
   calls it, or to nothing if 'inline' is not supported under any name.  */
#ifndef __cplusplus
/* #undef inline */
#endif

/* Define to `long int' if <sys/types.h> does not define. */
/* #undef off_t */

/* Define to `unsigned int' if <sys/types.h> does not define. */
/* #undef size_t */
 
/* once: _SRC_CLUSTAL_OMEGA_CONFIG_H */
#endif