/usr/include/clustalo/clustal/tree.h is in libclustalo-dev 1.2.1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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* Clustal Omega - Multiple sequence alignment
*
* Copyright (C) 2010 University College Dublin
*
* Clustal-Omega is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License as
* published by the Free Software Foundation; either version 2 of the
* License, or (at your option) any later version.
*
* This file is part of Clustal-Omega.
*
********************************************************************/
/*
* RCS $Id: tree.h 193 2011-02-07 15:45:21Z andreas $
*/
#ifndef CLUSTALO_TREE_H
#define CLUSTALO_TREE_H
#include "symmatrix.h"
#include "muscle_tree.h"
#include "seq.h"
enum {LEFT_NODE = 0, RGHT_NODE, PRNT_NODE, DIFF_NODE};
extern void
GuideTreeUpgma(tree_t **tree,
char **labels, symmatrix_t *tmat, char *ftree);
extern int
GuideTreeFromFile(tree_t **tree,
mseq_t *mseq, char *ftree);
extern void
TraverseTree(int **piOrderLR_p,
tree_t *tree, mseq_t *mseq);
#endif
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