This file is indexed.

/usr/include/dcmtk/dcmsr/dsrrefin.h is in libdcmtk-dev 3.6.1~20150924-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
/*
 *
 *  Copyright (C) 2011-2015, OFFIS e.V.
 *  All rights reserved.  See COPYRIGHT file for details.
 *
 *  This software and supporting documentation were developed by
 *
 *    OFFIS e.V.
 *    R&D Division Health
 *    Escherweg 2
 *    D-26121 Oldenburg, Germany
 *
 *
 *  Module: dcmsr
 *
 *  Author: Joerg Riesmeier
 *
 *  Purpose:
 *    classes: DSRReferencedInstanceList
 *
 */


#ifndef DSRREFIN_H
#define DSRREFIN_H

#include "dcmtk/config/osconfig.h"   /* make sure OS specific configuration is included first */

#include "dcmtk/dcmsr/dsrtypes.h"
#include "dcmtk/dcmsr/dsrcodvl.h"

#include "dcmtk/ofstd/oflist.h"


/*---------------------*
 *  class declaration  *
 *---------------------*/

/** Class that manages a list of SOP instances significantly related to the current
 *  SR document.  This is an implementation of the Referenced Instance Sequence.
 */
class DCMTK_DCMSR_EXPORT DSRReferencedInstanceList
  : public DSRTypes
{

  public:

    /** constructor (default)
     */
    DSRReferencedInstanceList();

    /** destructor
     */
    ~DSRReferencedInstanceList();

    /** clear the list
     */
    void clear();

    /** check whether list is empty
     ** @return OFTrue if list is empty, OFFalse otherwise
     */
    OFBool empty() const;

    /** get number of items stored in the list
     ** @return number of items
     */
    size_t getNumberOfItems() const;

    /** read list of items from the referenced instance sequence
     ** @param  dataset  DICOM dataset from which the data should be read
     *  @param  flags    flag used to customize the reading process (see DSRTypes::RF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition read(DcmItem &dataset,
                     const size_t flags);

    /** write list of items to the referenced instance sequence.
     *  Does nothing if list is empty.
     ** @param  dataset  DICOM dataset to which the data should be written
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition write(DcmItem &dataset) const;

    /** read list of items from XML document
     ** @param  doc     document containing the XML file content
     *  @param  cursor  cursor pointing to the starting node
     *  @param  flags   flag used to customize the reading process (see DSRTypes::XF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition readXML(const DSRXMLDocument &doc,
                        DSRXMLCursor cursor,
                        const size_t flags);

    /** write current list in XML format
     ** @param  stream  output stream to which the XML data is written
     *  @param  flags   flag used to customize the output (see DSRTypes::XF_xxx)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition writeXML(STD_NAMESPACE ostream &stream,
                         const size_t flags) const;

    /** add new entry to the list of instances (if not already existent).
     *  Before adding (or searching for) the entry, the given UID values are usually
     *  checked.  If one of the values is invalid, nothing is done but an error is
     *  returned.  If successful, the specified item is selected as the current one.
     ** @param  sopClassUID  SOP class UID of the entry to be added (VR=UI, mandatory)
     *  @param  instanceUID  SOP instance UID of the entry to be added (VR=UI, mandatory)
     *  @param  check        if enabled, check values for validity before adding them.
     *                       See checkSOPInstance() method for details.  An empty value
     *                       is never accepted.
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition addItem(const OFString &sopClassUID,
                        const OFString &instanceUID,
                        const OFBool check = OFTrue);

    /** remove the current item from the list.
     *  After successful removal the cursor is set to the next valid position.
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition removeItem();

    /** remove the specified item from the list.
     *  After successful removal the cursor is set to the next valid position.
     ** @param  sopClassUID  SOP class UID of the item to be removed
     *  @param  instanceUID  SOP instance UID of the item to be removed
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition removeItem(const OFString &sopClassUID,
                           const OFString &instanceUID);

    /** select the specified item as the current one
     ** @param  sopClassUID  SOP class UID of the item to be selected
     *  @param  instanceUID  SOP instance UID of the item to be selected
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition gotoItem(const OFString &sopClassUID,
                         const OFString &instanceUID);

    /** select the first item in the list
     ** @return status, EC_Normal if successful, an error code otherwise.
     *    (e.g. if the list is empty)
     */
    OFCondition gotoFirstItem();

    /** select the next item in the list
     ** @return status, EC_Normal if successful, an error code otherwise.
     *    (e.g. if the end of the list has been reached)
     */
    OFCondition gotoNextItem();

    /** get the SOP class UID of the currently selected entry
     ** @param  sopClassUID  reference to string variable in which the result is stored
     ** @return reference to the resulting string (might be empty)
     */
    const OFString &getSOPClassUID(OFString &sopClassUID) const;

    /** get the SOP instance UID of the currently selected entry
     ** @param  instanceUID  reference to string variable in which the result is stored
     ** @return reference to the resulting string (might be empty)
     */
    const OFString &getSOPInstanceUID(OFString &instanceUID) const;

    /** get purpose of reference code of the currently selected entry
     ** @param  purposeOfReference  variable where a copy of the code should be stored
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition getPurposeOfReference(DSRCodedEntryValue &purposeOfReference) const;

    /** set purpose of reference code of the currently selected entry.
     *  Before setting the value, it is usually checked.  If the value is invalid, the
     *  current value is not replaced and remains unchanged.
     ** @param  purposeOfReference  value to be set (mandatory)
     *  @param  check               if enabled, check value for validity before setting it.
     *                              See checkPurposeOfReference() method for details.  An
     *                              empty value is never accepted.
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition setPurposeOfReference(const DSRCodedEntryValue &purposeOfReference,
                                      const OFBool check = OFTrue);


  protected:

    /** Internal structure defining the list items
     */
    struct DCMTK_DCMSR_EXPORT ItemStruct
    {
        /** constructor
         ** @param  sopClassUID  SOP class UID
         ** @param  instanceUID  SOP instance UID
         */
        ItemStruct(const OFString &sopClassUID,
                   const OFString &instanceUID)
          : SOPClassUID(sopClassUID),
            InstanceUID(instanceUID),
            PurposeOfReference()
        {}

        /** clear additional information
         */
        void clear()
        {
            // an empty code is invalid
            PurposeOfReference.clear();
        }

        /// SOP Class UID (VR=UI, type 1)
        const OFString SOPClassUID;
        /// SOP Instance UID (VR=UI, type 1)
        const OFString InstanceUID;
        /// Purpose of Reference Code Sequence (VR=SQ, type 1)
        DSRCodedEntryValue PurposeOfReference;
    };

    /** add the specified SOP instance to the list (if not existent)
     ** @param  sopClassUID  SOP class UID of the entry to be added
     *  @param  instanceUID  SOP instance UID of the entry to be added
     *  @param  item         reference to item pointer (result variable)
     ** @return status, EC_Normal if successful, an error code otherwise
     */
    OFCondition addItem(const OFString &sopClassUID,
                        const OFString &instanceUID,
                        ItemStruct *&item);

    /** get pointer to currently selected item structure (if any)
     ** @return pointer to the item structure if successful, NULL otherwise
     */
    ItemStruct *getCurrentItem() const;

    /** check the specified SOP class UID and SOP instance UID for validity.
     *  Currently, the only checks performed are that the strings are non-empty and that
     *  the given values conform to the corresponding VR (UI) and VM (1).
     ** @param  sopClassUID  SOP class UID to be checked
     *  @param  instanceUID  SOP instance UID to be checked
     ** @return status, EC_Normal if all values are valid, an error code otherwise
     */
    OFCondition checkSOPInstance(const OFString &sopClassUID,
                                 const OFString &instanceUID) const;

    /** check the specified purpose of reference code for validity.
     *  Internally, the methods DSRCodedEntryValue::isEmpty() and
     *  DSRCodedEntryValue::checkCurrentValue() are used for this purpose.  Conformance
     *  with the Context Group 7006 (as defined in the DICOM standard) is not yet checked.
     ** @param  purposeOfReference  purpose of reference code to be checked
     ** @return status, EC_Normal if code is valid, an error code otherwise
     */
    OFCondition checkPurposeOfReference(const DSRCodedEntryValue &purposeOfReference) const;


  private:

    /// list of items
    OFList<ItemStruct *> ItemList;
    /// internal cursor to current (selected) list item
    OFListIterator(ItemStruct *) Iterator;

    // copy constructor - not implemented!
    DSRReferencedInstanceList(const DSRReferencedInstanceList &);
    // assignment operator - not implemented!
    DSRReferencedInstanceList &operator=(const DSRReferencedInstanceList &);
};


#endif