This file is indexed.

/usr/include/dune/grid-glue/merging/conformingmerge.hh is in libdune-grid-glue-dev 2.4.0-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
// -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
/*
 *  Filename:    conformingmerge.hh
 *  Version:     1.0
 *  Created on:  Sep 14, 2009
 *  Author:      Oliver Sander
 *  ---------------------------------
 *  Project:     dune-grid-glue
 *  Description: implementation of the Merger concept for conforming interfaces
 *
 */
/**
 * @file
 * @brief
 * Implementation of the Merger concept for conforming interfaces
 */

#ifndef DUNE_GRIDGLUE_MERGING_CONFORMINGMERGE_HH
#define DUNE_GRIDGLUE_MERGING_CONFORMINGMERGE_HH

#include <iomanip>
#include <vector>
#include <algorithm>
#include <bitset>

#include <dune/common/fmatrix.hh>
#include <dune/common/fvector.hh>

#include <dune/geometry/referenceelements.hh>

#include <dune/grid-glue/merging/standardmerge.hh>

namespace Dune {

  namespace GridGlue {

/** \brief Implementation of the Merger concept for conforming interfaces

   \tparam dim Grid dimension of the coupling grids.  Must be the same for both sides
   \tparam dimworld  Dimension of the world coordinates.
   \tparam T Type used for coordinates
 */
template<int dim, int dimworld, typename T = double>
class ConformingMerge
  : public StandardMerge<T,dim,dim,dimworld>
{

public:

  /*   E X P O R T E D   T Y P E S   A N D   C O N S T A N T S   */

  /// @brief the numeric type used in this interface
  typedef T ctype;

  /// @brief the coordinate type used in this interface
  typedef Dune::FieldVector<T, dimworld>  WorldCoords;

  /// @brief the coordinate type used in this interface
  typedef Dune::FieldVector<T, dim>  LocalCoords;

private:

  /*   M E M B E R   V A R I A B L E S   */

  /// @brief maximum distance between two matched points in the mapping
  T tolerance_;

  typedef typename StandardMerge<T,dim,dim,dimworld>::RemoteSimplicialIntersection RemoteSimplicialIntersection;

  /** \brief Compute the intersection between two overlapping elements

     The result is a set of simplices.
   */
  void computeIntersections(const Dune::GeometryType& grid1ElementType,
                                   const std::vector<Dune::FieldVector<T,dimworld> >& grid1ElementCorners,
                                   std::bitset<(1<<dim)>& neighborIntersects1,
                                   unsigned int grid1Index,
                                   const Dune::GeometryType& grid2ElementType,
                                   const std::vector<Dune::FieldVector<T,dimworld> >& grid2ElementCorners,
                                   std::bitset<(1<<dim)>& neighborIntersects2,
                                   unsigned int grid2Index,
                                   std::vector<RemoteSimplicialIntersection>& intersections);

public:

  ConformingMerge(T tolerance = 1E-4) :
    tolerance_(tolerance)
  {}

private:

  /*   M A P P I N G   O N   I N D E X   B A S I S   */

  /**
   * @brief get index of grid1 parent simplex for given merged grid simplex
   * @param idx index of the merged grid simplex
   * @return index of the grid1 parent simplex
   */
  unsigned int grid1Parent(unsigned int idx, unsigned int parId = 0) const;

  /**
   * @brief get index of grid2 parent simplex for given merged grid simplex
   * @param idx index of the merged grid simplex
   * @return index of the grid2 parent simplex
   */
  unsigned int grid2Parent(unsigned int idx, unsigned int parId = 0) const;

  /*   G E O M E T R I C A L   I N F O R M A T I O N   */

  /**
   * @brief get the grid1 parent's simplex local coordinates for a particular merged grid simplex corner
   * (parent's index can be obtained via "grid1Parent")
   * @param idx the index of the merged grid simplex
   * @param corner the index of the simplex' corner
   * @return local coordinates in parent grid1 simplex
   */
  LocalCoords grid1ParentLocal(unsigned int idx, unsigned int corner, unsigned int parId = 0) const;

  /**
   * @brief get the grid2 parent's simplex local coordinates for a particular merged grid simplex corner
   * (parent's index can be obtained via "grid2Parent")
   * @param idx the index of the merged grid simplex
   * @param corner the index of the simplex' corner
   * @return local coordinates in parent grid2 simplex
   */
  LocalCoords grid2ParentLocal(unsigned int idx, unsigned int corner, unsigned int parId = 0) const;

};


template<int dim, int dimworld, typename T>
void ConformingMerge<dim, dimworld, T>::computeIntersections(const Dune::GeometryType& grid1ElementType,
                                                            const std::vector<Dune::FieldVector<T,dimworld> >& grid1ElementCorners,
                                                            std::bitset<(1<<dim)>& neighborIntersects1,
                                                            unsigned int grid1Index,
                                                            const Dune::GeometryType& grid2ElementType,
                                                            const std::vector<Dune::FieldVector<T,dimworld> >& grid2ElementCorners,
                                                            std::bitset<(1<<dim)>& neighborIntersects2,
                                                            unsigned int grid2Index,
                                                            std::vector<RemoteSimplicialIntersection>& intersections)
{
  this->counter++;

  // A few consistency checks
#if DUNE_VERSION_NEWER(DUNE_GEOMETRY,2,3)
  assert((unsigned int)(Dune::ReferenceElements<T,dim>::general(grid1ElementType).size(dim)) == grid1ElementCorners.size());
  assert((unsigned int)(Dune::ReferenceElements<T,dim>::general(grid2ElementType).size(dim)) == grid2ElementCorners.size());
#else
  assert((unsigned int)(Dune::GenericReferenceElements<T,dim>::general(grid1ElementType).size(dim)) == grid1ElementCorners.size());
  assert((unsigned int)(Dune::GenericReferenceElements<T,dim>::general(grid2ElementType).size(dim)) == grid2ElementCorners.size());
#endif
  // any intersection we may find will be the entire elements.
  neighborIntersects1.reset();
  neighborIntersects2.reset();

  // the intersection is either conforming or empty, hence the GeometryTypes have to match
  if (grid1ElementType != grid2ElementType)
    return;

  // ////////////////////////////////////////////////////////////
  //   Find correspondences between the different corners
  // ////////////////////////////////////////////////////////////
  std::vector<int> other(grid1ElementCorners.size(), -1);

  for (unsigned int i=0; i<grid1ElementCorners.size(); i++) {

    for (unsigned int j=0; j<grid2ElementCorners.size(); j++) {

      if ( (grid1ElementCorners[i]-grid2ElementCorners[j]).two_norm() < tolerance_ ) {

        other[i] = j;
        break;

      }

    }

    // No corresponding grid2 vertex found for this grid1 vertex
    if (other[i] == -1)
      return;

  }

  // ////////////////////////////////////////////////////////////
  //   Set up the new remote intersection
  // ////////////////////////////////////////////////////////////

#if DUNE_VERSION_NEWER(DUNE_GEOMETRY,2,3)
  const Dune::ReferenceElement<T,dim>& refElement = Dune::ReferenceElements<T,dim>::general(grid1ElementType);
#else
  const Dune::GenericReferenceElement<T,dim>& refElement = Dune::GenericReferenceElements<T,dim>::general(grid1ElementType);
#endif

  /** \todo Currently the RemoteIntersections have to be simplices */
  if (grid1ElementType.isSimplex()) {

    intersections.push_back(RemoteSimplicialIntersection(grid1Index, grid2Index));

    for (int i=0; i<refElement.size(dim); i++) {
      intersections.back().grid1Local_[0][i] = refElement.position(i,dim);
      intersections.back().grid2Local_[0][i] = refElement.position(other[i],dim);
    }

  } else if (grid1ElementType.isQuadrilateral()) {

    // split the quadrilateral into two triangles
    const unsigned int subVertices[2][3] = {{0,1,3}, {0,3,2}};

    for (int i=0; i<2; i++) {

      RemoteSimplicialIntersection newSimplicialIntersection(grid1Index, grid2Index);

      for (int j=0; j<dim+1; j++) {
        newSimplicialIntersection.grid1Local_[0][j] = refElement.position(subVertices[i][j],dim);
        newSimplicialIntersection.grid2Local_[0][j] = refElement.position(subVertices[i][other[j]],dim);
      }

      intersections.push_back(newSimplicialIntersection);

    }

  } else if (grid1ElementType.isHexahedron()) {

    // split the hexahedron into five tetrahedra
    // This can be removed if ever we allow RemoteIntersections that are not simplices
    const unsigned int subVertices[5][4] = {{0,1,3,5}, {0,3,2,6}, {4,5,0,6}, {6,7,6,3}, {6,0,5,3}};

    for (int i=0; i<5; i++) {

      RemoteSimplicialIntersection newSimplicialIntersection(grid1Index, grid2Index);

      for (int j=0; j<dim+1; j++) {
        newSimplicialIntersection.grid1Local_[0][j] = refElement.position(subVertices[i][j],dim);
        newSimplicialIntersection.grid2Local_[0][j] = refElement.position(subVertices[i][other[j]],dim);
      }

      intersections.push_back(newSimplicialIntersection);

    }

  } else
    DUNE_THROW(Dune::GridError, "Unsupported element type");

}


template<int dim, int dimworld, typename T>
inline unsigned int ConformingMerge<dim, dimworld, T>::grid1Parent(unsigned int idx, unsigned int parId) const
{
    return this->intersections_[idx].grid1Entities_[parId];
}


template<int dim, int dimworld, typename T>
inline unsigned int ConformingMerge<dim, dimworld, T>::grid2Parent(unsigned int idx, unsigned int parId) const
{
  // Warning: Be careful to use the ACTUAL indexing here defined in the array sorted after grid1 parent indices!!
    return this->intersections_[idx].grid2Entities_[parId];
}


template<int dim, int dimworld, typename T>
typename ConformingMerge<dim, dimworld, T>::LocalCoords ConformingMerge<dim, dimworld, T>::grid1ParentLocal(unsigned int idx, unsigned int corner, unsigned int parId) const
{
  return this->intersections_[idx].grid1Local_[parId][corner];
}


template<int dim, int dimworld, typename T>
typename ConformingMerge<dim, dimworld, T>::LocalCoords ConformingMerge<dim, dimworld, T>::grid2ParentLocal(unsigned int idx, unsigned int corner, unsigned int parId) const
{
  return this->intersections_[idx].grid2Local_[parId][corner];
}

}  // namespace GridGlue

}  // namespace Dune

#endif // DUNE_GRIDGLUE_MERGING_CONFORMINGMERGE_HH