libinsighttoolkit4-dev 4.9.0-4ubuntu1 / usr / include / ITK-4.9 / itkIPLCommonImageIO.h

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
/**
 * \file   itkIPLCommonImageIO.h
 *         Much of the code for this file reader/writer was taken from
 *         the University of Iowa Imaging Group library with the
 *         permission of the authors, Milan Sonka, Joseph Reinhardt,
 *         Ryan Long, Hans Johnson, Gary Christensen, and others.
 *         The specification for this file format is taken from the
 *         web site http://analyzedirect.com/support/10.0Documents/Analyze_Resource_01.pdf
 * \author Kent Williams
 *         The University of Iowa 2003
 * \brief This file was written as a modification to the itkMetaImageIO
 *        as a new method for reading in files from the GE4 scanner.
 */

#ifndef itkIPLCommonImageIO_h
#define itkIPLCommonImageIO_h
#include "ITKIOIPLExport.h"

#include "itkImageIOBase.h"
#include "itkIPLFileNameList.h"
#include "itkGEImageHeader.h"

namespace itk
{
/** \class IPLCommonImageIO
  *
  * \author Hans J. Johnson
  * \brief Class that defines how to read GE4 file format.
  *
  * \ingroup IOFilters
  * \ingroup ITKIOIPL
  */
class ITKIOIPL_EXPORT IPLCommonImageIO:public ImageIOBase
{
public:
  /** Standard class typedefs. */
  typedef IPLCommonImageIO     Self;
  typedef ImageIOBase          Superclass;
  typedef SmartPointer< Self > Pointer;

  typedef unsigned char  U8;
  typedef signed char    S8;
  typedef unsigned short U16;
  typedef signed short   S16;
  typedef unsigned int   U32;
  typedef signed int     S32;
  typedef uint64_t       U64;
  typedef int64_t        S64;
  typedef float          F32;
  typedef double         F64;

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro(IPLCommonImageIO, Superclass);

  /*-------- This part of the interfaces deals with reading data. ----- */

  /** Determine if the file can be read with this ImageIO implementation.
    * \author Hans J Johnson
    * \param FileNameToRead The name of the file to test for reading.
    * \post Sets classes ImageIOBase::m_FileName variable to be FileNameToWrite
    * \return Returns true if this ImageIO can read the file specified.
    */
  virtual bool CanReadFile(const char *FileNameToRead) ITK_OVERRIDE;

  /** Set the spacing and dimension information for the set filename. */
  virtual void ReadImageInformation() ITK_OVERRIDE;

  /** Optionally, modify spacing, origin and direction */
  virtual void ModifyImageInformation() {}

  /** Reads the data from disk into the memory buffer provided. */
  virtual void Read(void *buffer) ITK_OVERRIDE;

  /** Compute the size (in bytes) of the components of a pixel. For
       * example, and RGB pixel of unsigned char would have a
       * component size of 1 byte. */
  virtual unsigned int GetComponentSize() const ITK_OVERRIDE;

  /*-------- This part of the interfaces deals with writing data. ----- */

  /** Determine if the file can be written with this ImageIO implementation.
       * \param FileNameToWrite The name of the file to test for writing.
       * \author Hans J. Johnson
       * \post Sets classes ImageIOBase::m_FileName variable to be FileNameToWrite
       * \return Returns true if this ImageIO can write the file specified.
       */
  virtual bool CanWriteFile(const char *FileNameToWrite) ITK_OVERRIDE;

  /** Set the spacing and dimension information for the set filename. */
  virtual void WriteImageInformation() ITK_OVERRIDE;

  /** Writes the data to disk from the memory buffer provided. Make sure
       * that the IORegions has been set properly. */
  virtual void Write(const void *buffer) ITK_OVERRIDE;

  /** Set sorting method by name ascending. */
  virtual void SortImageListByNameAscend();

  /** Set sorting method by name descending. */
  virtual void SortImageListByNameDescend();

protected:
  IPLCommonImageIO();
  ~IPLCommonImageIO();
  virtual void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  int AddElementToList(char const *const filename,
                       const float sliceLocation,
                       const int offset,
                       const int XDim,
                       const int YDim,
                       const float XRes,
                       const float YRes,
                       const int Key1,
                       const int Key2);

  void sortImageListAscend();

  void sortImageListDescend();

  int statTimeToAscii(void *clock, char *timeString, int len);

  virtual GEImageHeader * ReadHeader(const char *FileNameToRead);

  //
  // data members
  GEImageHeader         *m_ImageHeader;
  ImageIOBase::ByteOrder m_SystemByteOrder;
  IPLFileNameList       *m_FilenameList;
  //
  // return 0 on success, -1 on failure
  int GetStringAt(std::ifstream & f, std::streamoff Offset, char *buf,
                  size_t amount, bool throw_exception = true);

  int GetIntAt(std::ifstream & f, std::streamoff Offset, int *ip,
               bool throw_exception = true);

  int GetShortAt(std::ifstream & f, std::streamoff Offset, short *ip,
                 bool throw_exception = true);

  int GetFloatAt(std::ifstream & f, std::streamoff Offset, float *ip,
                 bool throw_exception = true);

  int GetDoubleAt(std::ifstream & f, std::streamoff Offset, double *ip,
                  bool throw_exception = true);

  short hdr2Short(char *hdr);

  int hdr2Int(char *hdr);

  float hdr2Float(char *hdr);

  double hdr2Double(char *hdr);

private:
  IPLCommonImageIO(const Self &) ITK_DELETE_FUNCTION;
  void operator=(const Self &) ITK_DELETE_FUNCTION;
};
} // end namespace itk
#define RAISE_EXCEPTION()                                    \
            { ExceptionObject exception(__FILE__, __LINE__); \
            exception.SetDescription("File cannot be read"); \
            throw exception; }

#define IOCHECK()      \
  if ( f.fail() )      \
    {                  \
    if ( f.is_open() ) \
      {                \
      f.close();       \
      }                \
    RAISE_EXCEPTION(); \
    }

#endif // itkAnalyzeImageIO_h