This file is indexed.

/usr/include/ITK-4.9/itkMetaSurfaceConverter.hxx is in libinsighttoolkit4-dev 4.9.0-4ubuntu1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkMetaSurfaceConverter_hxx
#define itkMetaSurfaceConverter_hxx

#include "itkMetaSurfaceConverter.h"

namespace itk
{
/** Constructor */
template< unsigned int NDimensions >
MetaSurfaceConverter< NDimensions >
::MetaSurfaceConverter()
{}

template< unsigned int NDimensions >
typename MetaSurfaceConverter< NDimensions >::MetaObjectType *
MetaSurfaceConverter< NDimensions>
::CreateMetaObject()
{
  return dynamic_cast<MetaObjectType *>(new SurfaceMetaObjectType);
}

/** Convert a metaSurface into an Surface SpatialObject */
template< unsigned int NDimensions >
typename MetaSurfaceConverter< NDimensions >::SpatialObjectPointer
MetaSurfaceConverter< NDimensions >
::MetaObjectToSpatialObject(const MetaObjectType *mo)
{
  const SurfaceMetaObjectType *surfaceMO = dynamic_cast<const SurfaceMetaObjectType *>(mo);
  if(surfaceMO == ITK_NULLPTR)
    {
    itkExceptionMacro(<< "Can't convert MetaObject to MetaSurface");
    }
  typename SurfaceSpatialObjectType::Pointer  surfaceSO = SurfaceSpatialObjectType::New();

  double spacing[NDimensions];

  unsigned int ndims = surfaceMO->NDims();
  for ( unsigned int ii = 0; ii < ndims; ii++ )
    {
    spacing[ii] = surfaceMO->ElementSpacing()[ii];
    }
  surfaceSO->GetIndexToObjectTransform()->SetScaleComponent(spacing);
  surfaceSO->GetProperty()->SetName( surfaceMO->Name() );
  surfaceSO->SetId( surfaceMO->ID() );
  surfaceSO->SetParentId( surfaceMO->ParentID() );
  surfaceSO->GetProperty()->SetRed(surfaceMO->Color()[0]);
  surfaceSO->GetProperty()->SetGreen(surfaceMO->Color()[1]);
  surfaceSO->GetProperty()->SetBlue(surfaceMO->Color()[2]);
  surfaceSO->GetProperty()->SetAlpha(surfaceMO->Color()[3]);

  typedef typename SurfaceSpatialObjectType::SurfacePointType SurfacePointType;

  typedef SurfaceMetaObjectType::PointListType ListType;

  ListType::const_iterator it2 = surfaceMO->GetPoints().begin();

  for ( unsigned int identifier = 0; identifier < surfaceMO->GetPoints().size(); identifier++ )
    {
    SurfacePointType pnt;

    typedef typename SurfacePointType::PointType PointType;
    PointType point;
    typedef typename SurfacePointType::VectorType VectorType;
    VectorType normal;

    for ( unsigned int ii = 0; ii < ndims; ii++ )
      {
      point[ii] = ( *it2 )->m_X[ii];
      }

    for ( unsigned int ii = 0; ii < ndims; ii++ )
      {
      normal[ii] = ( *it2 )->m_V[ii];
      }

    pnt.SetRed( ( *it2 )->m_Color[0] );
    pnt.SetGreen( ( *it2 )->m_Color[1] );
    pnt.SetBlue( ( *it2 )->m_Color[2] );
    pnt.SetAlpha( ( *it2 )->m_Color[3] );

    pnt.SetPosition(point);
    pnt.SetNormal(normal);

    surfaceSO->GetPoints().push_back(pnt);
    it2++;
    }

  return surfaceSO.GetPointer();
}

/** Convert a Surface SpatialObject into a metaSurface */
template< unsigned int NDimensions >
typename MetaSurfaceConverter< NDimensions >::MetaObjectType *
MetaSurfaceConverter< NDimensions >
::SpatialObjectToMetaObject(const SpatialObjectType *so)
{
  SurfaceSpatialObjectConstPointer surfaceSO =
    dynamic_cast<const SurfaceSpatialObjectType *>(so);

  if(surfaceSO.IsNull())
    {
    itkExceptionMacro(<< "Can't downcast SpatialObject to SurfaceSpatialObject");
    }
  MetaSurface *surfaceMO = new MetaSurface(NDimensions);

  // fill in the Surface information
  typename SurfaceSpatialObjectType::PointListType::const_iterator it;
  for ( it = surfaceSO->GetPoints().begin();
        it != surfaceSO->GetPoints().end();
        ++it )
    {
    SurfacePnt *pnt = new SurfacePnt(NDimensions);

    for ( unsigned int d = 0; d < NDimensions; d++ )
      {
      pnt->m_X[d] = ( *it ).GetPosition()[d];
      }

    for ( unsigned int d = 0; d < NDimensions; d++ )
      {
      pnt->m_V[d] = ( *it ).GetNormal()[d];
      }

    pnt->m_Color[0] = ( *it ).GetRed();
    pnt->m_Color[1] = ( *it ).GetGreen();
    pnt->m_Color[2] = ( *it ).GetBlue();
    pnt->m_Color[3] = ( *it ).GetAlpha();

    surfaceMO->GetPoints().push_back(pnt);
    }

  if ( NDimensions == 2 )
    {
    surfaceMO->PointDim("x y v1 v2 red green blue alpha");
    }
  else if ( NDimensions == 3 )
    {
    surfaceMO->PointDim("x y z v1 v2 v3 red green blue alpha");
    }

  float color[4];
  for ( unsigned int ii = 0; ii < 4; ii++ )
    {
    color[ii] = surfaceSO->GetProperty()->GetColor()[ii];
    }

  surfaceMO->Color(color);
  surfaceMO->ID( surfaceSO->GetId() );
  if ( surfaceSO->GetParent() )
    {
    surfaceMO->ParentID( surfaceSO->GetParent()->GetId() );
    }
  surfaceMO->NPoints( surfaceMO->GetPoints().size() );

  for ( unsigned int ii = 0; ii < NDimensions; ii++ )
    {
    surfaceMO->ElementSpacing(ii, surfaceSO->GetIndexToObjectTransform()->GetScaleComponent()[ii]);
    }

  return surfaceMO;
}

} // end namespace itk

#endif