libinsighttoolkit4-dev 4.9.0-4ubuntu1 / usr / include / ITK-4.9 / itkSimplexMeshVolumeCalculator.hxx

/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkSimplexMeshVolumeCalculator_hxx
#define itkSimplexMeshVolumeCalculator_hxx

#include "itkSimplexMeshVolumeCalculator.h"
#include "itkMath.h"

namespace itk
{
/**
 * Constructor
 */
template< typename TInputMesh >
SimplexMeshVolumeCalculator< TInputMesh >
::SimplexMeshVolumeCalculator() :
  m_Volume(0.0),
  m_VolumeX(0.0),
  m_VolumeY(0.0),
  m_VolumeZ(0.0),
  m_Area(0.0),
  m_Kx(0.0),
  m_Ky(0.0),
  m_Kz(0.0),
  m_Wxyz(0.0),
  m_Wxy(0.0),
  m_Wxz(0.0),
  m_Wyz(0.0),
  m_Muncx(0),
  m_Muncy(0),
  m_Muncz(0),
  m_NumberOfTriangles(0)
{
}

template< typename TInputMesh >
SimplexMeshVolumeCalculator< TInputMesh >
::~SimplexMeshVolumeCalculator()
{}

template< typename TInputMesh >
void SimplexMeshVolumeCalculator< TInputMesh >
::Initialize()
{
  SimplexVisitorInterfacePointer simplexVisitor = SimplexVisitorInterfaceType::New();

  simplexVisitor->SetMesh(m_SimplexMesh);
  CellMultiVisitorPointer mv = CellMultiVisitorType::New();
  mv->AddVisitor(simplexVisitor);
  m_SimplexMesh->Accept(mv);
  m_SimplexMesh->BuildCellLinks();
  m_Centers = simplexVisitor->GetCenterMap();

  m_Volume = m_VolumeX = m_VolumeY = m_VolumeZ = 0.0;
  m_Area = 0.0;
  m_Kx = m_Ky = m_Kz = 0.0;
  m_Muncx = m_Muncy = m_Muncz = 0;
  m_Wxyz = m_Wxy = m_Wxz = m_Wyz = 0;

  m_NumberOfTriangles = 0;
}

template< typename TInputMesh >
void SimplexMeshVolumeCalculator< TInputMesh >
::Finalize()
{
  // Compute fraction of elements that primarily point along the x, y
  // and z directions
  m_Kx = ( m_Muncx + ( m_Wxyz / 3.0 ) + ( ( m_Wxy + m_Wxz ) / 2.0 ) ) / m_NumberOfTriangles;
  m_Ky = ( m_Muncy + ( m_Wxyz / 3.0 ) + ( ( m_Wxy + m_Wyz ) / 2.0 ) ) / m_NumberOfTriangles;
  m_Kz = ( m_Muncz + ( m_Wxyz / 3.0 ) + ( ( m_Wxz + m_Wyz ) / 2.0 ) ) / m_NumberOfTriangles;

  m_Volume =  ( m_Kx * m_VolumeX
                + m_Ky * m_VolumeY
                + m_Kz * m_VolumeZ );
  m_Volume =  std::fabs(m_Volume);
}

template< typename TInputMesh >
IdentifierType SimplexMeshVolumeCalculator< TInputMesh >
::FindCellId(IdentifierType id1, IdentifierType id2, IdentifierType id3)
{
  typedef std::set< typename InputMeshType::PointIdentifier > PointSetType;
  typedef typename PointSetType::iterator                     PointSetIterator;

  PointSetType cells1 =  m_SimplexMesh->GetCellLinks()->GetElement(id1);
  PointSetType cells2 =  m_SimplexMesh->GetCellLinks()->GetElement(id2);
  PointSetType cells3 =  m_SimplexMesh->GetCellLinks()->GetElement(id3);

  PointSetIterator cellIt = cells1.begin();

  while ( cellIt != cells1.end() )
    {
    PointSetIterator found2 = std::find(cells2.begin(), cells2.end(), *cellIt);
    PointSetIterator found3 = std::find(cells3.begin(), cells3.end(), *cellIt);

    if ( found2 != cells2.end() && found3 != cells3.end() )
      {
      break;
      }
    cellIt++;
    }

  if ( cellIt == cells1.end() )
    {
    itkExceptionMacro(<< "Cell was not found, although it should be there");
    }

  return *cellIt;
}

/**
 * Calculate volume of triangle
 */
template< typename TInputMesh >
void
SimplexMeshVolumeCalculator< TInputMesh >
::CalculateTriangleVolume(InputPointType p1, InputPointType p2, InputPointType p3)
{
  double area;
  double a, b, c, s;
  double i[3], j[3], k[3], u[3], absu[3], length;
  double ii[3], jj[3], kk[3];
  double xavg, yavg, zavg;

  // Get i j k vectors ...
  //
  i[0] = ( p2[0] - p1[0] ); j[0] = ( p2[1] - p1[1] ); k[0] = ( p2[2] - p1[2] );
  i[1] = ( p3[0] - p1[0] ); j[1] = ( p3[1] - p1[1] ); k[1] = ( p3[2] - p1[2] );
  i[2] = ( p3[0] - p2[0] ); j[2] = ( p3[1] - p2[1] ); k[2] = ( p3[2] - p2[2] );

  // Cross product between two vectors, to determine normal vector
  //
  u[0] = ( j[0] * k[1] - k[0] * j[1] );
  u[1] = ( k[0] * i[1] - i[0] * k[1] );
  u[2] = ( i[0] * j[1] - j[0] * i[1] );

  // Normalize normal
  //
  length = std::sqrt(u[0] * u[0] + u[1] * u[1] + u[2] * u[2]);
  if ( length != 0.0 )
    {
    u[0] /= length;
    u[1] /= length;
    u[2] /= length;
    }
  else
    {
    u[0] = u[1] = u[2] = 0.0;
    }

  // Determine max unit normal component...
  //
  absu[0] = std::fabs(u[0]); absu[1] = std::fabs(u[1]); absu[2] = std::fabs(u[2]);
  if ( ( absu[0] > absu[1] ) && ( absu[0] > absu[2] ) )
    {
    m_Muncx++;
    }
  else if ( ( absu[1] > absu[0] ) && ( absu[1] > absu[2] ) )
    {
    m_Muncy++;
    }
  else if ( ( absu[2] > absu[0] ) && ( absu[2] > absu[1] ) )
    {
    m_Muncz++;
    }
  else if ( Math::AlmostEquals( absu[0], absu[1] ) && itk::Math::AlmostEquals( absu[0], absu[2] ) )
    {
    m_Wxyz++;
    }
  else if ( Math::AlmostEquals( absu[0], absu[1] ) && ( absu[0] > absu[2] ) )
    {
    m_Wxy++;
    }
  else if ( Math::AlmostEquals( absu[0], absu[2] ) && ( absu[0] > absu[1] ) )
    {
    m_Wxz++;
    }
  else if ( Math::AlmostEquals( absu[1], absu[2] ) && ( absu[0] < absu[2] ) )
    {
    m_Wyz++;
    }
  else
    {
    itkWarningMacro(<< "Unpredicted situation...!" << "absu: " << absu[0] << ", " << absu[1] << ", " << absu[2] );
    return;
    }

  // This is reduced to ...
  //
  ii[0] = i[0] * i[0]; ii[1] = i[1] * i[1]; ii[2] = i[2] * i[2];
  jj[0] = j[0] * j[0]; jj[1] = j[1] * j[1]; jj[2] = j[2] * j[2];
  kk[0] = k[0] * k[0]; kk[1] = k[1] * k[1]; kk[2] = k[2] * k[2];

  // Area of a triangle using Heron's formula...
  //
  a = std::sqrt(ii[1] + jj[1] + kk[1]);
  b = std::sqrt(ii[0] + jj[0] + kk[0]);
  c = std::sqrt(ii[2] + jj[2] + kk[2]);
  s = 0.5 * ( a + b + c );
  area = std::sqrt( std::fabs( s * ( s - a ) * ( s - b ) * ( s - c ) ) );

  // Volume elements ...
  //
  zavg = ( p1[2] + p2[2] + p3[2] ) / 3.0;
  yavg = ( p1[1] + p2[1] + p3[1] ) / 3.0;
  xavg = ( p1[0] + p2[0] + p3[0] ) / 3.0;

  m_VolumeX += ( area * (double)u[2] * (double)zavg );
  m_VolumeY += ( area * (double)u[1] * (double)yavg );
  m_VolumeZ += ( area * (double)u[0] * (double)xavg );

  m_Area += area;

  m_NumberOfTriangles++;
}

template< typename TInputMesh >
void SimplexMeshVolumeCalculator< TInputMesh >
::Compute()
{
  this->Initialize();

  InputPointType p1, p2, p3;
  p1.Fill(0.0);
  p2.Fill(0.0);
  p3.Fill(0.0);

  InputPointsContainerPointer  Points    = m_SimplexMesh->GetPoints();
  InputPointsContainerIterator pointsIt  = Points->Begin();
  InputPointsContainerIterator pointsEnd = Points->End();

  while ( pointsIt != pointsEnd )
    {
    typename InputMeshType::IndexArray n = m_SimplexMesh->GetNeighbors( pointsIt.Index() );

    IdentifierType newId1 = FindCellId(n[0], pointsIt.Index(), n[1]);
    IdentifierType newId2 = FindCellId(n[1], pointsIt.Index(), n[2]);
    IdentifierType newId3 = FindCellId(n[2], pointsIt.Index(), n[0]);

    bool b1 = m_Centers->GetElementIfIndexExists(newId1, &p1);
    bool b2 = m_Centers->GetElementIfIndexExists(newId2, &p2);
    bool b3 = m_Centers->GetElementIfIndexExists(newId3, &p3);

    if ( !( b1 && b2 && b3 ) )
      {
      itkExceptionMacro(<< "Assertion failed for test of GetElementIfIndexExists()");
      }
    else
      {
      CalculateTriangleVolume(p1, p2, p3);
      }
    pointsIt++;
    }
  this->Finalize();
}

/**
 * PrintSelf
 */
template< typename TInputMesh >
void
SimplexMeshVolumeCalculator< TInputMesh >
::PrintSelf(std::ostream & os, Indent indent) const
{
  Superclass::PrintSelf(os, indent);
//  os << indent << "Mesh   = " << m_SimplexMesh << std::endl;
  os << indent << "Area = " << m_Area << std::endl;
  os << indent << "Volume = " << m_Volume << std::endl;
  os << indent << "VolumeX = " << m_VolumeX << std::endl;
  os << indent << "VolumeY = " << m_VolumeY << std::endl;
  os << indent << "VolumeZ = " << m_VolumeZ << std::endl;
  os << indent << "Kx = " << m_Kx << std::endl;
  os << indent << "Ky = " << m_Ky << std::endl;
  os << indent << "Kz = " << m_Kz << std::endl;
  os << indent << "NumberOfTriangles: " << m_NumberOfTriangles << std::endl;
}
} // end of namspace itk

#endif