libinsighttoolkit4-dev 4.9.0-4ubuntu1 / usr / include / ITK-4.9 / itkVectorGradientNDAnisotropicDiffusionFunction.hxx

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 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
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 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
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 *=========================================================================*/
#ifndef itkVectorGradientNDAnisotropicDiffusionFunction_hxx
#define itkVectorGradientNDAnisotropicDiffusionFunction_hxx

#include "itkVectorGradientNDAnisotropicDiffusionFunction.h"

namespace itk
{
template< typename TImage >
double VectorGradientNDAnisotropicDiffusionFunction< TImage >
::m_MIN_NORM = 1.0e-10;

template< typename TImage >
VectorGradientNDAnisotropicDiffusionFunction< TImage >
::VectorGradientNDAnisotropicDiffusionFunction():
  m_K( 0.0 )
{
  unsigned int i, j;
  RadiusType   r;

  for ( i = 0; i < ImageDimension; ++i )
    {
    r[i] = 1;
    }
  this->SetRadius(r);

  // Dummy neighborhood used to set up the slices.
  Neighborhood< PixelType, ImageDimension > it;
  it.SetRadius(r);

  // Slice the neighborhood
  m_Center =  it.Size() / 2;

  for ( i = 0; i < ImageDimension; ++i )
    {
    m_Stride[i] = it.GetStride(i);
    }

  for ( i = 0; i < ImageDimension; ++i )
    {
    x_slice[i]  = std::slice(m_Center - m_Stride[i], 3, m_Stride[i]);
    }

  for ( i = 0; i < ImageDimension; ++i )
    {
    for ( j = 0; j < ImageDimension; ++j )
      {
      // For taking derivatives in the i direction that are offset one
      // pixel in the j direction.
      xa_slice[i][j] =
        std::slice( ( m_Center + m_Stride[j] ) - m_Stride[i], 3, m_Stride[i] );
      xd_slice[i][j] =
        std::slice( ( m_Center - m_Stride[j] ) - m_Stride[i], 3, m_Stride[i] );
      }
    }

  // Allocate the derivative operator.
  dx_op.SetDirection(0); // Not relelevant, we'll apply in a slice-based
                         // fashion
  dx_op.SetOrder(1);
  dx_op.CreateDirectional();
}

template< typename TImage >
typename VectorGradientNDAnisotropicDiffusionFunction< TImage >::PixelType
VectorGradientNDAnisotropicDiffusionFunction< TImage >
::ComputeUpdate(const NeighborhoodType & it, void *,
                const FloatOffsetType &)
{
  unsigned int i, j, k;
  PixelType    delta;

  double GradMag;
  double GradMag_d;
  double Cx[ImageDimension];
  double Cxd[ImageDimension];

  // Remember: PixelType is a Vector of length VectorDimension.
  PixelType dx_forward[ImageDimension];
  PixelType dx_backward[ImageDimension];
  PixelType dx[ImageDimension];
  PixelType dx_aug;
  PixelType dx_dim;

  // Calculate the directional and centralized derivatives.
  for ( i = 0; i < ImageDimension; i++ )
    {
    // ``Half'' derivatives
    dx_forward[i] = it.GetPixel(m_Center + m_Stride[i])
                    - it.GetPixel(m_Center);
    dx_forward[i] = dx_forward[i]  * this->m_ScaleCoefficients[i];
    dx_backward[i] =  it.GetPixel(m_Center)
                     - it.GetPixel(m_Center - m_Stride[i]);
    dx_backward[i] = dx_backward[i] * this->m_ScaleCoefficients[i];

    // Centralized differences
    dx[i]      = m_InnerProduct(x_slice[i], it, dx_op);
    dx[i] = dx[i] * this->m_ScaleCoefficients[i];
    }

  // Calculate the conductance term for each dimension.
  for ( i = 0; i < ImageDimension; i++ )
    {
    // Calculate gradient magnitude approximation in this
    // dimension linked (summed) across the vector components.
    GradMag   = 0.0;
    GradMag_d = 0.0;
    for ( k = 0; k < VectorDimension; k++ )
      {
      GradMag += vnl_math_sqr(dx_forward[i][k]);
      GradMag_d += vnl_math_sqr(dx_backward[i][k]);

      for ( j = 0; j < ImageDimension; j++ )
        {
        if ( j != i )
          {
          dx_aug  = m_InnerProduct(xa_slice[j][i], it, dx_op);
          dx_aug = dx_aug * this->m_ScaleCoefficients[j];
          dx_dim  = m_InnerProduct(xd_slice[j][i], it, dx_op);
          dx_dim = dx_dim * this->m_ScaleCoefficients[j];
          GradMag += 0.25f * vnl_math_sqr(dx[j][k] + dx_aug[k]);
          GradMag_d += 0.25f * vnl_math_sqr(dx[j][k] + dx_dim[k]);
          }
        }
      }

    if ( m_K == 0.0 )
      {
      Cx[i] = 0.0;
      Cxd[i] = 0.0;
      }
    else
      {
      Cx[i]  = std::exp(GradMag   / m_K);
      Cxd[i] = std::exp(GradMag_d / m_K);
      }
    }

  // Compute update value
  for ( k = 0; k < VectorDimension; k++ )
    {
    delta[k] = NumericTraits< ScalarValueType >::ZeroValue();

    for ( i = 0; i < ImageDimension; ++i )
      {
      dx_forward[i][k] *= Cx[i];
      dx_backward[i][k] *= Cxd[i];
      delta[k] += dx_forward[i][k] - dx_backward[i][k];
      }
    }

  return delta;
}
} // end namespace itk

#endif