/usr/include/ITK-4.9/itkWarpHarmonicEnergyCalculator.h is in libinsighttoolkit4-dev 4.9.0-4ubuntu1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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*
* Copyright Insight Software Consortium
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkWarpHarmonicEnergyCalculator_h
#define itkWarpHarmonicEnergyCalculator_h
#include "itkObject.h"
#include "itkObjectFactory.h"
#include "itkConstNeighborhoodIterator.h"
#include "itkVector.h"
namespace itk
{
/** \class WarpHarmonicEnergyCalculator
*
* \brief Compute the harmonic energy of a deformation field
*
* This class computes the harmonic energy of a deformation
* field which is a measure inversely related to the smoothness
* of the deformation field
*
* \author Tom Vercauteren, INRIA & Mauna Kea Technologies
*
* This implementation was taken from the Insight Journal paper:
* http://hdl.handle.net/1926/510
*
* \ingroup Operators
* \ingroup ITKReview
*/
template< typename TInputImage >
class WarpHarmonicEnergyCalculator:public Object
{
public:
/** Standard class typedefs. */
typedef WarpHarmonicEnergyCalculator Self;
typedef Object Superclass;
typedef SmartPointer< Self > Pointer;
typedef SmartPointer< const Self > ConstPointer;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** Run-time type information (and related methods). */
itkTypeMacro(WarpHarmonicEnergyCalculator, Object);
/** Type definition for the input image. */
typedef TInputImage ImageType;
/** Pointer type for the image. */
typedef typename TInputImage::Pointer ImagePointer;
/** Const Pointer type for the image. */
typedef typename TInputImage::ConstPointer ImageConstPointer;
/** Type definition for the input image pixel type. */
typedef typename TInputImage::PixelType PixelType;
/** Type definition for the input image index type. */
typedef typename TInputImage::IndexType IndexType;
/** Type definition for the input image region type. */
typedef typename TInputImage::RegionType RegionType;
/** The dimensionality of the input image. */
itkStaticConstMacro(ImageDimension, unsigned int,
TInputImage::ImageDimension);
/** Length of the vector pixel type of the input image. */
itkStaticConstMacro(VectorDimension, unsigned int,
PixelType::Dimension);
/** Type of the iterator that will be used to move through the image. Also
the type which will be passed to the evaluate function */
typedef ConstNeighborhoodIterator< ImageType > ConstNeighborhoodIteratorType;
typedef typename ConstNeighborhoodIteratorType::RadiusType RadiusType;
/** Set the derivative weights according to the spacing of the input image
* (1/spacing). Use this option if you want to calculate the Jacobian
* determinant in the space in which the data was acquired. */
void SetUseImageSpacingOn()
{
this->SetUseImageSpacing(true);
}
/** Reset the derivative weights to ignore image spacing. Use this option if
* you want to calculate the Jacobian determinant in the image space.
* Default is ImageSpacingOn. */
void SetUseImageSpacingOff()
{
this->SetUseImageSpacing(false);
}
/** Set/Get whether or not the filter will use the spacing of the input
* image in its calculations */
void SetUseImageSpacing(bool);
itkGetConstMacro(UseImageSpacing, bool);
typedef FixedArray< double, ImageDimension > WeightsType;
/** Directly Set/Get the array of weights used in the gradient calculations.
* Note that calling UseImageSpacingOn will clobber these values. */
itkSetMacro(DerivativeWeights, WeightsType);
itkGetConstReferenceMacro(DerivativeWeights, WeightsType);
/** Set the input image. */
itkSetConstObjectMacro(Image, ImageType);
/** Compute the minimum and maximum values of intensity of the input image. */
void Compute();
/** Return the smoothness value. */
itkGetConstMacro(HarmonicEnergy, double);
/** Set the region over which the values will be computed */
void SetRegion(const RegionType & region);
protected:
WarpHarmonicEnergyCalculator();
virtual ~WarpHarmonicEnergyCalculator() {}
virtual void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;
/** Get/Set the neighborhood radius used for gradient computation */
itkGetConstReferenceMacro(NeighborhoodRadius, RadiusType);
itkSetMacro(NeighborhoodRadius, RadiusType);
double EvaluateAtNeighborhood(ConstNeighborhoodIteratorType & it) const;
private:
WarpHarmonicEnergyCalculator(const Self &) ITK_DELETE_FUNCTION;
void operator=(const Self &) ITK_DELETE_FUNCTION;
double m_HarmonicEnergy;
ImageConstPointer m_Image;
RegionType m_Region;
bool m_RegionSetByUser;
bool m_UseImageSpacing;
/** The weights used to scale partial derivatives during processing */
WeightsType m_DerivativeWeights;
RadiusType m_NeighborhoodRadius;
};
} // end namespace itk
#ifndef ITK_MANUAL_INSTANTIATION
#include "itkWarpHarmonicEnergyCalculator.hxx"
#endif
#endif /* itkWarpHarmonicEnergyCalculator_h */
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