/usr/include/ncl/nxsdefs.h is in libncl-dev 2.1.18+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 | // Copyright (C) 1999-2003 Paul O. Lewis
//
// This file is part of NCL (Nexus Class Library) version 2.0.
//
// NCL is free software; you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation; either version 2 of the License, or
// (at your option) any later version.
//
// NCL is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with NCL; if not, write to the Free Software Foundation, Inc.,
// 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
//
#ifndef NCL_NXSDEFS_H
#define NCL_NXSDEFS_H
#include <iostream>
#include <vector>
#include <map>
#include <set>
#include <list>
#include <utility>
#define NCL_MAJOR_VERSION 2
#define NCL_MINOR_VERSION 1
#define NCL_NAME_AND_VERSION "NCL version 2.1.17"
#define NCL_COPYRIGHT "Copyright (c) 1999-2011 by Paul O. Lewis and Mark T. Holder"
#define NCL_HOMEPAGEURL "http://sourceforge.net/projects/ncl"
#if defined(RESERVE_ID_KEYWORD)
# define NCL_BLOCKTYPE_ATTR_NAME blockTypeName
#else
# define NCL_BLOCKTYPE_ATTR_NAME id
#endif
// NCL_COULD_BE_CONST is a mechanism for declaring some old (v < 2.1) functions
// to be const without breaking old client code.
// If you would like your code to be more const-correct, then define NCL_CONST_FUNCS
// when you compile NCL and your code. This will cause several functions that
// should have been declared as const to be declared that way in your code.
// By default NCL_CONST_FUNCS will not be defined and these functions will not
// be defined as const member functions.
#if defined(NCL_CONST_FUNCS) && NCL_CONST_FUNCS
# define NCL_COULD_BE_CONST const
int onlyDefinedInCouldBeConst();
#else
# define NCL_COULD_BE_CONST
#endif
#if defined(IGNORE_NXS_ASSERT) || defined(NDEBUG)
# define NCL_ASSERT(expr)
#else
void ncl_assertion_failed(char const * expr, char const * function, char const * file, long line);
# define NCL_ASSERT(expr) if (!(expr)) ncl_assertion_failed((const char *)#expr, (const char *)__FUNCTION__, __FILE__, __LINE__)
#endif
// Maximum number of states that can be stored; the only limitation is that this
// number be less than the maximum size of an int (not likely to be a problem).
// A good number for this is 76, which is 96 (the number of distinct symbols
// able to be input from a standard keyboard) less 20 (the number of symbols
// symbols disallowed by the NEXUS standard for use as state symbols)
//
#define NCL_MAX_STATES 76
typedef std::streampos file_pos;
#define SUPPORT_OLD_NCL_NAMES
class NxsString;
typedef std::vector<bool> NxsBoolVector;
typedef std::vector<char> NxsCharVector;
typedef std::vector<int> NxsIntVector;
typedef std::vector<unsigned> NxsUnsignedVector;
typedef std::vector<NxsString> NxsStringVector;
typedef std::vector<NxsStringVector> NxsAllelesVector;
typedef std::set<unsigned> NxsUnsignedSet;
typedef std::map< unsigned, NxsStringVector> NxsStringVectorMap;
typedef std::map< NxsString, NxsString> NxsStringMap;
typedef std::map< NxsString, NxsUnsignedSet> NxsUnsignedSetMap;
typedef std::pair<std::string, NxsUnsignedSet> NxsPartitionGroup;
typedef std::list<NxsPartitionGroup> NxsPartition;
typedef std::map<std::string, NxsPartition> NxsPartitionsByName;
// The following typedefs are simply for maintaining compatibility with existing code.
// The names on the right are deprecated and should not be used.
//
typedef NxsBoolVector BoolVect;
typedef NxsUnsignedSet IntSet;
typedef NxsUnsignedSetMap IntSetMap;
typedef NxsAllelesVector AllelesVect;
typedef NxsStringVector LabelList;
typedef NxsStringVector StrVec;
typedef NxsStringVector vecStr;
typedef NxsStringVectorMap LabelListBag;
typedef NxsStringMap AssocList;
class ProcessedNxsToken;
typedef std::vector<ProcessedNxsToken> ProcessedNxsCommand;
#endif
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