This file is indexed.

/usr/include/ode/matrix.h is in libode-dev 2:0.13.1+git20150309-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
/*************************************************************************
 *                                                                       *
 * Open Dynamics Engine, Copyright (C) 2001,2002 Russell L. Smith.       *
 * All rights reserved.  Email: russ@q12.org   Web: www.q12.org          *
 *                                                                       *
 * This library is free software; you can redistribute it and/or         *
 * modify it under the terms of EITHER:                                  *
 *   (1) The GNU Lesser General Public License as published by the Free  *
 *       Software Foundation; either version 2.1 of the License, or (at  *
 *       your option) any later version. The text of the GNU Lesser      *
 *       General Public License is included with this library in the     *
 *       file LICENSE.TXT.                                               *
 *   (2) The BSD-style license that is included with this library in     *
 *       the file LICENSE-BSD.TXT.                                       *
 *                                                                       *
 * This library is distributed in the hope that it will be useful,       *
 * but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the files    *
 * LICENSE.TXT and LICENSE-BSD.TXT for more details.                     *
 *                                                                       *
 *************************************************************************/

/* optimized and unoptimized vector and matrix functions */

#ifndef _ODE_MATRIX_H_
#define _ODE_MATRIX_H_

#include <ode/common.h>


#ifdef __cplusplus
extern "C" {
#endif


/* set a vector/matrix of size n to all zeros, or to a specific value. */

ODE_API void dSetZero (dReal *a, int n);
ODE_API void dSetValue (dReal *a, int n, dReal value);


/* get the dot product of two n*1 vectors. if n <= 0 then
 * zero will be returned (in which case a and b need not be valid).
 */

ODE_API dReal dDot (const dReal *a, const dReal *b, int n);


/* get the dot products of (a0,b), (a1,b), etc and return them in outsum.
 * all vectors are n*1. if n <= 0 then zeroes will be returned (in which case
 * the input vectors need not be valid). this function is somewhat faster
 * than calling dDot() for all of the combinations separately.
 */

/* NOT INCLUDED in the library for now.
void dMultidot2 (const dReal *a0, const dReal *a1,
		 const dReal *b, dReal *outsum, int n);
*/


/* matrix multiplication. all matrices are stored in standard row format.
 * the digit refers to the argument that is transposed:
 *   0:   A = B  * C   (sizes: A:p*r B:p*q C:q*r)
 *   1:   A = B' * C   (sizes: A:p*r B:q*p C:q*r)
 *   2:   A = B  * C'  (sizes: A:p*r B:p*q C:r*q)
 * case 1,2 are equivalent to saying that the operation is A=B*C but
 * B or C are stored in standard column format.
 */

ODE_API void dMultiply0 (dReal *A, const dReal *B, const dReal *C, int p,int q,int r);
ODE_API void dMultiply1 (dReal *A, const dReal *B, const dReal *C, int p,int q,int r);
ODE_API void dMultiply2 (dReal *A, const dReal *B, const dReal *C, int p,int q,int r);


/* do an in-place cholesky decomposition on the lower triangle of the n*n
 * symmetric matrix A (which is stored by rows). the resulting lower triangle
 * will be such that L*L'=A. return 1 on success and 0 on failure (on failure
 * the matrix is not positive definite).
 */

ODE_API int dFactorCholesky (dReal *A, int n);


/* solve for x: L*L'*x = b, and put the result back into x.
 * L is size n*n, b is size n*1. only the lower triangle of L is considered.
 */

ODE_API void dSolveCholesky (const dReal *L, dReal *b, int n);


/* compute the inverse of the n*n positive definite matrix A and put it in
 * Ainv. this is not especially fast. this returns 1 on success (A was
 * positive definite) or 0 on failure (not PD).
 */

ODE_API int dInvertPDMatrix (const dReal *A, dReal *Ainv, int n);


/* check whether an n*n matrix A is positive definite, return 1/0 (yes/no).
 * positive definite means that x'*A*x > 0 for any x. this performs a
 * cholesky decomposition of A. if the decomposition fails then the matrix
 * is not positive definite. A is stored by rows. A is not altered.
 */

ODE_API int dIsPositiveDefinite (const dReal *A, int n);


/* factorize a matrix A into L*D*L', where L is lower triangular with ones on
 * the diagonal, and D is diagonal.
 * A is an n*n matrix stored by rows, with a leading dimension of n rounded
 * up to 4. L is written into the strict lower triangle of A (the ones are not
 * written) and the reciprocal of the diagonal elements of D are written into
 * d.
 */
ODE_API void dFactorLDLT (dReal *A, dReal *d, int n, int nskip);


/* solve L*x=b, where L is n*n lower triangular with ones on the diagonal,
 * and x,b are n*1. b is overwritten with x.
 * the leading dimension of L is `nskip'.
 */
ODE_API void dSolveL1 (const dReal *L, dReal *b, int n, int nskip);


/* solve L'*x=b, where L is n*n lower triangular with ones on the diagonal,
 * and x,b are n*1. b is overwritten with x.
 * the leading dimension of L is `nskip'.
 */
ODE_API void dSolveL1T (const dReal *L, dReal *b, int n, int nskip);


/* in matlab syntax: a(1:n) = a(1:n) .* d(1:n) */

ODE_API void dVectorScale (dReal *a, const dReal *d, int n);


/* given `L', a n*n lower triangular matrix with ones on the diagonal,
 * and `d', a n*1 vector of the reciprocal diagonal elements of an n*n matrix
 * D, solve L*D*L'*x=b where x,b are n*1. x overwrites b.
 * the leading dimension of L is `nskip'.
 */

ODE_API void dSolveLDLT (const dReal *L, const dReal *d, dReal *b, int n, int nskip);


/* given an L*D*L' factorization of an n*n matrix A, return the updated
 * factorization L2*D2*L2' of A plus the following "top left" matrix:
 *
 *    [ b a' ]     <-- b is a[0]
 *    [ a 0  ]     <-- a is a[1..n-1]
 *
 *   - L has size n*n, its leading dimension is nskip. L is lower triangular
 *     with ones on the diagonal. only the lower triangle of L is referenced.
 *   - d has size n. d contains the reciprocal diagonal elements of D.
 *   - a has size n.
 * the result is written into L, except that the left column of L and d[0]
 * are not actually modified. see ldltaddTL.m for further comments. 
 */
ODE_API void dLDLTAddTL (dReal *L, dReal *d, const dReal *a, int n, int nskip);


/* given an L*D*L' factorization of a permuted matrix A, produce a new
 * factorization for row and column `r' removed.
 *   - A has size n1*n1, its leading dimension in nskip. A is symmetric and
 *     positive definite. only the lower triangle of A is referenced.
 *     A itself may actually be an array of row pointers.
 *   - L has size n2*n2, its leading dimension in nskip. L is lower triangular
 *     with ones on the diagonal. only the lower triangle of L is referenced.
 *   - d has size n2. d contains the reciprocal diagonal elements of D.
 *   - p is a permutation vector. it contains n2 indexes into A. each index
 *     must be in the range 0..n1-1.
 *   - r is the row/column of L to remove.
 * the new L will be written within the old L, i.e. will have the same leading
 * dimension. the last row and column of L, and the last element of d, are
 * undefined on exit.
 *
 * a fast O(n^2) algorithm is used. see ldltremove.m for further comments.
 */
ODE_API void dLDLTRemove (dReal **A, const int *p, dReal *L, dReal *d,
		  int n1, int n2, int r, int nskip);


/* given an n*n matrix A (with leading dimension nskip), remove the r'th row
 * and column by moving elements. the new matrix will have the same leading
 * dimension. the last row and column of A are untouched on exit.
 */
ODE_API void dRemoveRowCol (dReal *A, int n, int nskip, int r);

#ifdef __cplusplus
}
#endif


#endif