This file is indexed.

/usr/include/ompl/datastructures/Grid.h is in libompl-dev 1.0.0+ds2-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
/*********************************************************************
* Software License Agreement (BSD License)
*
*  Copyright (c) 2010, Rice University
*  All rights reserved.
*
*  Redistribution and use in source and binary forms, with or without
*  modification, are permitted provided that the following conditions
*  are met:
*
*   * Redistributions of source code must retain the above copyright
*     notice, this list of conditions and the following disclaimer.
*   * Redistributions in binary form must reproduce the above
*     copyright notice, this list of conditions and the following
*     disclaimer in the documentation and/or other materials provided
*     with the distribution.
*   * Neither the name of the Rice University nor the names of its
*     contributors may be used to endorse or promote products derived
*     from this software without specific prior written permission.
*
*  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
*  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
*  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
*  FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
*  COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
*  INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
*  BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
*  LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
*  CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
*  LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
*  ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
*  POSSIBILITY OF SUCH DAMAGE.
*********************************************************************/

/* Author: Ioan Sucan */

#ifndef OMPL_DATASTRUCTURES_GRID_
#define OMPL_DATASTRUCTURES_GRID_

#include <vector>
#include <iostream>
#include <cstdlib>
#include <boost/unordered_map.hpp>
#include <algorithm>

namespace ompl
{

    /** \brief Representation of a simple grid */
    template <typename _T>
    class Grid
    {
    public:

        /// Definition of a coordinate within this grid
        typedef std::vector<int> Coord;

        /// Definition of a cell in this grid
        struct Cell
        {
            /// The data we store in the cell
            _T                  data;

            /// The coordinate of the cell
            Coord               coord;

            Cell()
            {
            }

            virtual ~Cell()
            {
            }
        };

        /// The datatype for arrays of cells
        typedef std::vector<Cell*> CellArray;


        /// The constructor takes the dimension of the grid as argument
        explicit
        Grid(unsigned int dimension)
        {
            setDimension(dimension);
        }

        /// Destructor
        virtual ~Grid()
        {
            freeMemory();
        }

        /// Clear all cells in the grid
        virtual void clear()
        {
            freeMemory();
        }

        /// Return the dimension of the grid
        unsigned int getDimension() const
        {
            return dimension_;
        }

        /// Update the dimension of the grid; this should not be done
        /// unless the grid is empty
        void setDimension(unsigned int dimension)
        {
            if (!empty())
                throw;
            dimension_ = dimension;
            maxNeighbors_ = 2 * dimension_;
        }

        /// Check if a cell exists at the specified coordinate
        bool has(const Coord &coord) const
        {
            return getCell(coord) != NULL;
        }

        /// Get the cell at a specified coordinate
        Cell* getCell(const Coord &coord) const
        {
            iterator pos = hash_.find(const_cast<Coord*>(&coord));
            Cell *c = (pos != hash_.end()) ? pos->second : NULL;
            return c;
        }

        /// Get the list of neighbors for a given cell
        void    neighbors(const Cell* cell, CellArray& list) const
        {
            Coord test = cell->coord;
            neighbors(test, list);
        }

        /// Get the list of neighbors for a given coordinate
        void    neighbors(const Coord& coord, CellArray& list) const
        {
            Coord test = coord;
            neighbors(test, list);
        }

        /// Get the list of neighbors for a given coordinate
        void    neighbors(Coord& coord, CellArray& list) const
        {
            list.reserve(list.size() + maxNeighbors_);

            for (int i = dimension_ - 1 ; i >= 0 ; --i)
            {
                coord[i]--;

                iterator pos = hash_.find(&coord);
                Cell *cell = (pos != hash_.end()) ? pos->second : NULL;

                if (cell)
                    list.push_back(cell);
                coord[i] += 2;

                pos = hash_.find(&coord);
                cell = (pos != hash_.end()) ? pos->second : NULL;

                if (cell)
                    list.push_back(cell);
                coord[i]--;
            }
        }

        /// Get the connected components formed by the cells in this grid (based on neighboring relation)
        std::vector< std::vector<Cell*> > components() const
        {
            typedef boost::unordered_map<Coord*, int, HashFunCoordPtr, EqualCoordPtr> ComponentHash;
            typedef typename ComponentHash::iterator CHit;

            int components = 0;
            ComponentHash ch;
            std::vector< std::vector<Cell*> > res;

            for (iterator i = hash_.begin() ; i != hash_.end() ; ++i)
            {
                Cell *c0 = i->second;
                CHit pos = ch.find(&c0->coord);
                int comp = (pos != ch.end()) ? pos->second : -1;

                if (comp < 0)
                {
                    res.resize(res.size() + 1);
                    std::vector<Cell*> &q = res.back();
                    q.push_back(c0);
                    std::size_t index = 0;
                    while (index < q.size())
                    {
                        Cell *c = q[index++];
                        pos = ch.find(&c->coord);
                        comp = (pos != ch.end()) ? pos->second : -1;

                        if (comp < 0)
                        {
                            ch.insert(std::make_pair(&c->coord, components));
                            std::vector< Cell* > nbh;
                            neighbors(c, nbh);
                            for (unsigned int j = 0 ; j < nbh.size() ; ++j)
                            {
                                pos = ch.find(&nbh[j]->coord);
                                comp = (pos != ch.end()) ? pos->second : -1;
                                if (comp < 0)
                                    q.push_back(nbh[j]);
                            }
                        }
                        else
                        {
                            --index;
                            q.erase(q.begin() + index);
                        }
                    }
                    ++components;
                }
            }
            std::sort(res.begin(), res.end(), SortComponents());
            return res;
        }

        /// Instantiate a new cell at given coordinates; optionally
        /// Return the list of future neighbors.
        /// Note: this call only creates the cell, but does not add it to the grid.
        /// It however updates the neighbor count for neighboring cells
        virtual Cell* createCell(const Coord& coord, CellArray *nbh = NULL)
        {
            Cell *cell = new Cell();
            cell->coord = coord;
            if (nbh)
                neighbors(cell->coord, *nbh);
            return cell;
        }

        /// Remove a cell from the grid. If the cell has not been
        /// Added to the grid, only update the neighbor list
        virtual bool remove(Cell *cell)
        {
            if (cell)
            {
                typename CoordHash::iterator pos = hash_.find(&cell->coord);
                if (pos != hash_.end())
                {
                    hash_.erase(pos);
                    return true;
                }
            }
            return false;
        }

        /// Add an instantiated cell to the grid
        virtual void add(Cell *cell)
        {
            hash_.insert(std::make_pair(&cell->coord, cell));
        }

        /// Clear the memory occupied by a cell; do not call this function unless remove() was called first
        virtual void destroyCell(Cell *cell) const
        {
            delete cell;
        }

        /// Get the data stored in the cells we are aware of
        void getContent(std::vector<_T> &content) const
        {
            for (iterator i = hash_.begin() ; i != hash_.end() ; ++i)
                content.push_back(i->second->data);
        }

        /// Get the set of coordinates where there are cells
        void getCoordinates(std::vector<Coord*> &coords) const
        {
            for (iterator i = hash_.begin() ; i != hash_.end() ; ++i)
                coords.push_back(i->first);
        }

        /// Get the set of instantiated cells in the grid
        void getCells(CellArray &cells) const
        {
            for (iterator i = hash_.begin() ; i != hash_.end() ; ++i)
                cells.push_back(i->second);
        }

        /// Print the value of a coordinate to a stream
        void printCoord(Coord& coord, std::ostream &out = std::cout) const
        {
            out << "[ ";
            for (unsigned int i = 0 ; i < dimension_ ; ++i)
                out << coord[i] << " ";
            out << "]" << std::endl;
        }

        /// Check if the grid is empty
        bool empty() const
        {
            return hash_.empty();
        }

        /// Check the size of the grid
        unsigned int size() const
        {
            return hash_.size();
        }

        /// Print information about the data in this grid structure
        virtual void status(std::ostream &out = std::cout) const
        {
            out << size() << " total cells " << std::endl;
            const std::vector< std::vector<Cell*> > &comp = components();
            out << comp.size() << " connected components: ";
            for (std::size_t i = 0 ; i < comp.size() ; ++i)
                out << comp[i].size() << " ";
            out << std::endl;
        }

    protected:

        /// Free the allocated memory
        void freeMemory()
        {
            CellArray content;
            getCells(content);
            hash_.clear();

            for (unsigned int i = 0 ; i < content.size() ; ++i)
                delete content[i];
        }

        /// Hash function for coordinates; see http://www.cs.hmc.edu/~geoff/classes/hmc.cs070.200101/homework10/hashfuncs.html
        struct HashFunCoordPtr
        {
            /// Hash function for coordinates
            std::size_t operator()(const Coord* const s) const
            {
                unsigned long h = 0;
                for (int i = s->size() - 1; i >= 0; --i)
                {
                    int high = h & 0xf8000000;
                    h = h << 5;
                    h = h ^ (high >> 27);
                    h = h ^ s->at(i);
                }
                return (std::size_t) h;
            }
        };


        /// Equality operator for coordinate pointers
        struct EqualCoordPtr
        {
            /// Equality operator for coordinate pointers
            bool operator()(const Coord* const c1, const Coord* const c2) const
            {
                return *c1 == *c2;
            }
        };

        /// Define the datatype for the used hash structure
        typedef boost::unordered_map<Coord*, Cell*, HashFunCoordPtr, EqualCoordPtr> CoordHash;

        /// Helper to sort components by size
        struct SortComponents
        {
            /// Helper to sort components by size
            bool operator()(const std::vector<Cell*> &a, const std::vector<Cell*> &b) const
            {
                return a.size() > b.size();
            }
        };

    public:

        /// We only allow const iterators
        typedef typename CoordHash::const_iterator iterator;

        /// Return the begin() iterator for the grid
        iterator begin() const
        {
            return hash_.begin();
        }

        /// Return the end() iterator for the grid
        iterator end() const
        {
            return hash_.end();
        }

    protected:

        /// The dimension of the grid
        unsigned int     dimension_;

        /// The maximum number of neighbors a cell can have (2 * dimension)
        unsigned int     maxNeighbors_;

        /// The hash holding the cells
        CoordHash        hash_;
    };
}

#endif