/usr/include/pbihdf/HDFCmpData.hpp is in libpbihdf-dev 0~20151014+gitbe5d1bf-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | #ifndef _BLASR_HDF_CMP_DATA_HPP_
#define _BLASR_HDF_CMP_DATA_HPP_
#include "HDFAtom.hpp"
#include "HDFCmpRefAlignmentGroup.hpp"
class HDFCmpData {
public:
HDFAtom<std::string> commandLine;
H5::H5File hdfCmpFile;
HDFArray<int> movieNameIdArray;
HDFStringArray movieNameArray;
HDFStringArray readGroupPathArray;
HDFArray<int> readGroupPathIdArray;
HDFArray<int> refSeqNameIdArray;
HDFStringArray refSeqNameArray;
static const int NCols=22;
vector<HDFAtom<std::string> > colNameAtoms;
vector<HDFCmpRefAlignmentGroup*> refAlignGroups;
map<std::string, int> nameToAlignmentGroupIndex;
static const char *colNameIds[];
void Close() {
hdfCmpFile.close();
}
};
const char * HDFCmpData::colNameIds[] = {
"00", "01", "02", "03", "04", "05", "06", "07", "08", "09",
"10", "11", "12", "13", "14", "15", "16", "17", "18", "19",
"20", "21"};
#endif
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