This file is indexed.

/usr/include/palabos/latticeBoltzmann/advectionDiffusionDynamicsTemplates.h is in libplb-dev 1.5~r1+repack1-2build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
/* This file is part of the Palabos library.
 *
 * Copyright (C) 2011-2015 FlowKit Sarl
 * Route d'Oron 2
 * 1010 Lausanne, Switzerland
 * E-mail contact: contact@flowkit.com
 *
 * The most recent release of Palabos can be downloaded at 
 * <http://www.palabos.org/>
 *
 * The library Palabos is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * The library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

/* Main author: Orestis Malaspinas
 */

/** \file
 * Helper functions for the implementation of LB dynamics. This file is all
 * about efficiency. The generic template code is specialized for commonly
 * used Lattices, so that a maximum performance can be taken out of each
 * case.
 */
#ifndef ADVECTION_DIFFUSION_DYNAMICS_TEMPLATES_H
#define ADVECTION_DIFFUSION_DYNAMICS_TEMPLATES_H

#include "core/globalDefs.h"
#include "core/cell.h"
#include "core/util.h"
#include "latticeBoltzmann/dynamicsTemplates.h"
#include "latticeBoltzmann/offEquilibriumTemplates.h"
#include "latticeBoltzmann/offEquilibriumAdvectionDiffusionTemplates.h"

namespace plb {

template<typename T, class Descriptor> struct advectionDiffusionDynamicsTemplatesImpl;

/// This structure forwards the calls to the appropriate helper class
template<typename T, template<typename U> class Descriptor>
struct advectionDiffusionDynamicsTemplates {

static T bgk_ma1_equilibrium(plint iPop, T rhoBar, Array<T,Descriptor<T>::d> const& jEq) 
{
    return advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::bgk_ma1_equilibrium(iPop, rhoBar, jEq);
}

static void regularize(Cell<T,Descriptor>& cell, T rhoBar, Array<T,Descriptor<T>::d> const& jAdvDiff,
                       Array<T,Descriptor<T>::d> const& jEq)
{
    advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::regularize(cell.getRawPopulations(), rhoBar, jAdvDiff, jEq);
}

static T no_corr_bgk_collision(
        Cell<T,Descriptor>& cell, T rhoBar, 
        Array<T,Descriptor<T>::d> const& jEq, T omega)
{
    return advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::no_corr_bgk_collision(cell.getRawPopulations(), rhoBar, jEq, omega);
}

static T no_corr_bgk_collision(
        Cell<T,Descriptor>& cell, T rhoBar, 
        Array<T,Descriptor<T>::d> const& jEq, T omega, T sourceTerm)
{
    return advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::no_corr_bgk_collision(cell.getRawPopulations(), rhoBar, jEq, omega, sourceTerm);
}

static T no_corr_rlb_collision(Cell<T,Descriptor>& cell, T rhoBar,
                             Array<T,Descriptor<T>::d> const& jEq,
                             Array<T,Descriptor<T>::d> const& jNeq,
                             T omega )
{
    return advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::no_corr_rlb_collision(cell.getRawPopulations(), rhoBar, jEq, jNeq, omega);
}

static T no_corr_rlb_collision(Cell<T,Descriptor>& cell, T rhoBar,
                             Array<T,Descriptor<T>::d> const& jEq,
                             Array<T,Descriptor<T>::d> const& jNeq,
                             T omega, T sourceTerm )
{
    return advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::no_corr_rlb_collision(cell.getRawPopulations(), rhoBar, jEq, jNeq, omega, sourceTerm);
}

static T complete_mrt_ma2_ext_rhoBar_j_collision(Cell<T,Descriptor>& cell, T rhoBar, Array<T,Descriptor<T>::d> const& j, T omega, T omegaNonPhys)
{
    return dynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::complete_mrt_ma2_ext_rhoBar_j_collision(cell.getRawPopulations(), rhoBar, j, omega, omegaNonPhys, Descriptor<T>::d);
}

static void complete_bgk_ma2_regularize(Cell<T,Descriptor>& cell, T rhoPhiBar, T rhoBar,
                                        Array<T,Descriptor<T>::d> const& jEq, Array<T,Descriptor<T>::d> const& jNeq, 
                                        const Array<T,SymmetricTensor<T,Descriptor>::n> &piNeq, T omega, T omegaNonPhys, T omegaFluid, T omegaFluidNonPhys )
{
    
    return advectionDiffusionDynamicsTemplatesImpl<T,typename Descriptor<T>::BaseDescriptor>
        ::complete_bgk_ma2_regularize(cell.getRawPopulations(), rhoPhiBar, rhoBar, jEq, jNeq, piNeq, omega, omegaNonPhys, omegaFluid, omegaFluidNonPhys);
}

};  // struct advectionDiffusionDynamicsTemplates


/// All helper functions are inside this structure
template<typename T, class Descriptor>
struct advectionDiffusionDynamicsTemplatesImpl 
{

static T bgk_ma1_equilibrium(plint iPop, T rhoBar, Array<T,Descriptor::d> const& jEq) 
{
    T c_j = Descriptor::c[iPop][0]*jEq[0];
    for (int iD=1; iD < Descriptor::d; ++iD) {
       c_j += Descriptor::c[iPop][iD]*jEq[iD];
    }
    return Descriptor::t[iPop] * (rhoBar + Descriptor::invCs2 * c_j);
}

/// Regularization
static void regularize( Array<T,Descriptor::q>& f, T rhoBar,
                        Array<T,Descriptor::d> const& jAdvDiff,
                        Array<T,Descriptor::d> const& jEq )
{
    // Off-equilibrium j
    Array<T,Descriptor::d> jNeq;
    for (int iD=0; iD<Descriptor::d; ++iD) 
    {
        jNeq[iD] = jAdvDiff[iD] - jEq[iD];
    }

    // Regularize each population
    for (plint iPop=0; iPop<Descriptor::q; ++iPop) 
    {
        T fEq = bgk_ma1_equilibrium(iPop, rhoBar, jEq);
        T fNeq = (T)Descriptor::c[iPop][0] * jNeq[0];
        for (plint iD = 1; iD < Descriptor::d; ++iD)
        {
            fNeq += (T)Descriptor::c[iPop][iD] * jNeq[iD];
        }
        fNeq *= Descriptor::t[iPop] * Descriptor::invCs2;
        f[iPop] = fEq + fNeq;
    }
}

static T no_corr_bgk_collision(
        Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq, 
        T omega) 
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = VectorTemplateImpl<T,Descriptor::d>::normSqr(jEq);
    for (plint iPop=0; iPop < Descriptor::q; ++iPop) {
        f[iPop] *= (T)1-omega;
        f[iPop] += omega * advectionDiffusionDynamicsTemplatesImpl<T,Descriptor>::bgk_ma1_equilibrium (
                                iPop, rhoBar, jEq);
    }
    return jSqr*invRho*invRho;
}

static T no_corr_bgk_collision(
        Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq, 
        T omega, T sourceTerm) 
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = VectorTemplateImpl<T,Descriptor::d>::normSqr(jEq);
    for (plint iPop=0; iPop < Descriptor::q; ++iPop) {
        f[iPop] *= (T)1-omega;
        f[iPop] += omega * advectionDiffusionDynamicsTemplatesImpl<T,Descriptor>::bgk_ma1_equilibrium (
                                iPop, rhoBar, jEq);
        f[iPop] += Descriptor::t[iPop]*sourceTerm;
    }
    return jSqr*invRho*invRho;
}

static T no_corr_rlb_collision (
    Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq,
    Array<T,Descriptor::d> const& jNeq,T omega )
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = VectorTemplateImpl<T,Descriptor::d>::normSqr(jEq);
    
    for (plint iPop=0; iPop < Descriptor::q; ++iPop) 
    {
        f[iPop] = advectionDiffusionDynamicsTemplatesImpl<T,Descriptor>::
                bgk_ma1_equilibrium(iPop, rhoBar, jEq);
        T fNeq = ((T)1-omega) *
                 offEquilibriumAdvectionDiffusionTemplatesImpl<T,Descriptor>::fromJtoFneq(iPop, jNeq);
        f[iPop] += fNeq;
    }
    return jSqr*invRho*invRho;
}

static T no_corr_rlb_collision (
    Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq,
    Array<T,Descriptor::d> const& jNeq, T omega, T sourceTerm )
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = VectorTemplateImpl<T,Descriptor::d>::normSqr(jEq);
    
    for (plint iPop=0; iPop < Descriptor::q; ++iPop) 
    {
        f[iPop] = advectionDiffusionDynamicsTemplatesImpl<T,Descriptor>::
                bgk_ma1_equilibrium(iPop, rhoBar, jEq);
        T fNeq = ((T)1-omega) *
                 offEquilibriumAdvectionDiffusionTemplatesImpl<T,Descriptor>::fromJtoFneq(iPop, jNeq);
        f[iPop] += fNeq + Descriptor::t[iPop] * sourceTerm;
    }
    return jSqr*invRho*invRho;
}

static void complete_bgk_ma2_regularize(Array<T,Descriptor::q>& f, T rhoPhiBar, T rhoBar,
                                        Array<T,Descriptor::d> const& jEq, Array<T,Descriptor::d> const& jNeq, 
                                        const Array<T,SymmetricTensorImpl<T,Descriptor::d>::n> &piNeq, T omega, T omegaNonPhys, T omegaFluid, T omegaFluidNonPhys )
{
    PLB_ASSERT(false);
}

};  // struct advectionDiffusionDynamicsTemplatesImpl

}  // namespace plb

#include "latticeBoltzmann/advectionDiffusionDynamicsTemplates2D.h"
#include "latticeBoltzmann/advectionDiffusionDynamicsTemplates3D.h"

#endif