This file is indexed.

/usr/include/palabos/latticeBoltzmann/advectionDiffusionDynamicsTemplates3D.h is in libplb-dev 1.5~r1+repack1-2build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
/* This file is part of the Palabos library.
 *
 * Copyright (C) 2011-2015 FlowKit Sarl
 * Route d'Oron 2
 * 1010 Lausanne, Switzerland
 * E-mail contact: contact@flowkit.com
 *
 * The most recent release of Palabos can be downloaded at 
 * <http://www.palabos.org/>
 *
 * The library Palabos is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * The library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

/* Main author: Orestis Malaspinas
 */

/** \file
 * Helper functions for the implementation of LB dynamics. This file is all
 * about efficiency. The generic template code is specialized for commonly
 * used Lattices, so that a maximum performance can be taken out of each
 * case.
 */
#ifndef ADVECTION_DIFFUSION_DYNAMICS_TEMPLATES_3D_H
#define ADVECTION_DIFFUSION_DYNAMICS_TEMPLATES_3D_H

namespace plb {

/// All helper functions are inside this structure
template<typename T> struct advectionDiffusionDynamicsTemplatesImpl<T,descriptors::D3Q7DescriptorBase<T> >
{
    
typedef descriptors::D3Q7DescriptorBase<T> Descriptor;

static T bgk_ma1_equilibrium(plint iPop, T rhoBar, Array<T,Descriptor::d> const& jEq) 
{
    return Descriptor::t[iPop] * (rhoBar + Descriptor::invCs2 * 
            (Descriptor::c[iPop][0]*jEq[0]+Descriptor::c[iPop][1]*jEq[1]+Descriptor::c[iPop][2]*jEq[2]));
}

/// Regularization
static void regularize( Array<T,Descriptor::q>& f, T rhoBar,
                        Array<T,Descriptor::d> const& jAdvDiff,
                        Array<T,Descriptor::d> const& jEq )
{
    f[0] = Descriptor::t[0] * rhoBar;
    
    f[1] = Descriptor::t[1] * (rhoBar - Descriptor::invCs2*jAdvDiff[0]);
    f[2] = Descriptor::t[2] * (rhoBar - Descriptor::invCs2*jAdvDiff[1]);
    f[3] = Descriptor::t[3] * (rhoBar - Descriptor::invCs2*jAdvDiff[2]);
    f[4] = Descriptor::t[4] * (rhoBar + Descriptor::invCs2*jAdvDiff[0]);
    f[5] = Descriptor::t[5] * (rhoBar + Descriptor::invCs2*jAdvDiff[1]);
    f[6] = Descriptor::t[6] * (rhoBar + Descriptor::invCs2*jAdvDiff[2]);
}

static T no_corr_bgk_collision(
        Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq, 
        T omega) 
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = jEq[0]*jEq[0] + jEq[1]*jEq[1] + jEq[2]*jEq[2];
    
    const T oneMinusOmega = (T)1 - omega;
    const T halfOmega = (T)0.5 * omega;
    const T cs2RhoBar = Descriptor::cs2*rhoBar;
    
    f[0] = oneMinusOmega*f[0]+omega*((T)1-(T)3*Descriptor::cs2)*rhoBar;
    
    f[1] = oneMinusOmega*f[1]+halfOmega*(cs2RhoBar-jEq[0]);
    f[2] = oneMinusOmega*f[2]+halfOmega*(cs2RhoBar-jEq[1]);
    f[3] = oneMinusOmega*f[3]+halfOmega*(cs2RhoBar-jEq[2]);
    
    f[4] = oneMinusOmega*f[4]+halfOmega*(cs2RhoBar+jEq[0]);
    f[5] = oneMinusOmega*f[5]+halfOmega*(cs2RhoBar+jEq[1]);
    f[6] = oneMinusOmega*f[6]+halfOmega*(cs2RhoBar+jEq[2]);
    
    return jSqr*invRho*invRho;
}

static T no_corr_bgk_collision(
        Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq, 
        T omega, T source) 
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = jEq[0]*jEq[0] + jEq[1]*jEq[1] + jEq[2]*jEq[2];
    
    const T oneMinusOmega = (T)1 - omega;
    const T halfOmega = (T)0.5 * omega;
    const T cs2RhoBar = Descriptor::cs2*rhoBar;
    const T halfSourceCs2 = (T)0.5*source * Descriptor::cs2;
    
    f[0] = oneMinusOmega*f[0]+((T)1-(T)3*Descriptor::cs2)*(omega*rhoBar+source);
    
    f[1] = oneMinusOmega*f[1]+halfOmega*(cs2RhoBar-jEq[0]) + halfSourceCs2;
    f[2] = oneMinusOmega*f[2]+halfOmega*(cs2RhoBar-jEq[1]) + halfSourceCs2;
    f[3] = oneMinusOmega*f[3]+halfOmega*(cs2RhoBar-jEq[2]) + halfSourceCs2;
    
    f[4] = oneMinusOmega*f[4]+halfOmega*(cs2RhoBar+jEq[0]) + halfSourceCs2;
    f[5] = oneMinusOmega*f[5]+halfOmega*(cs2RhoBar+jEq[1]) + halfSourceCs2;
    f[6] = oneMinusOmega*f[6]+halfOmega*(cs2RhoBar+jEq[2]) + halfSourceCs2;
    
    return jSqr*invRho*invRho;
}

static T no_corr_rlb_collision (
    Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq,
    Array<T,Descriptor::d> const& jNeq,T omega )
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = jEq[0]*jEq[0] + jEq[1]*jEq[1] + jEq[2]*jEq[2];
    
    const T oneHalfMinusHalfOmega = (T)0.5-(T)0.5*omega;
    const T cs2RhoBar = Descriptor::cs2 * rhoBar;
    
    const T jNeqTerm_0 = oneHalfMinusHalfOmega*jNeq[0];
    const T jNeqTerm_1 = oneHalfMinusHalfOmega*jNeq[1];
    const T jNeqTerm_2 = oneHalfMinusHalfOmega*jNeq[2];
    
    f[0] = ((T)1-(T)3*Descriptor::cs2)*rhoBar;
    
    f[1] = -jNeqTerm_0 + (T)0.5*(cs2RhoBar-jEq[0]);
    f[2] = -jNeqTerm_1 + (T)0.5*(cs2RhoBar-jEq[1]);
    f[3] = -jNeqTerm_2 + (T)0.5*(cs2RhoBar-jEq[2]);
    
    f[4] = -f[1] + cs2RhoBar;
    f[5] = -f[2] + cs2RhoBar;
    f[6] = -f[3] + cs2RhoBar;
            
    return jSqr*invRho*invRho;
}

static T no_corr_rlb_collision (
    Array<T,Descriptor::q>& f, T rhoBar, Array<T,Descriptor::d> const& jEq,
    Array<T,Descriptor::d> const& jNeq, T omega, T source )
{
    T invRho = Descriptor::invRho(rhoBar);
    const T jSqr = jEq[0]*jEq[0] + jEq[1]*jEq[1] + jEq[2]*jEq[2];
    
    const T oneHalfMinusHalfOmega = (T)0.5-(T)0.5*omega;
    const T cs2RhoBar = Descriptor::cs2 * rhoBar;
    const T halfSourceCs2 = (T)0.5*source * Descriptor::cs2;
    
    const T jNeqTerm_0 = oneHalfMinusHalfOmega*jNeq[0];
    const T jNeqTerm_1 = oneHalfMinusHalfOmega*jNeq[1];
    const T jNeqTerm_2 = oneHalfMinusHalfOmega*jNeq[2];
    
    f[0] = ((T)1-(T)3*Descriptor::cs2)*(rhoBar+source);
    
    f[1] = -jNeqTerm_0 + (T)0.5*(cs2RhoBar-jEq[0]);
    f[2] = -jNeqTerm_1 + (T)0.5*(cs2RhoBar-jEq[1]);
    f[3] = -jNeqTerm_2 + (T)0.5*(cs2RhoBar-jEq[2]);
    
    f[4] = -f[1] + cs2RhoBar;
    f[5] = -f[2] + cs2RhoBar;
    f[6] = -f[3] + cs2RhoBar;

    f[1] += halfSourceCs2;
    f[2] += halfSourceCs2;
    f[3] += halfSourceCs2;
    f[4] += halfSourceCs2;
    f[5] += halfSourceCs2;
    f[6] += halfSourceCs2;
            
    return jSqr*invRho*invRho;
}

};  // struct advectionDiffusionDynamicsTemplatesImpl

}  // namespace plb

#endif