This file is indexed.

/usr/include/palabos/multiBlock/multiBlockManagement3D.h is in libplb-dev 1.5~r1+repack1-2build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
/* This file is part of the Palabos library.
 *
 * Copyright (C) 2011-2015 FlowKit Sarl
 * Route d'Oron 2
 * 1010 Lausanne, Switzerland
 * E-mail contact: contact@flowkit.com
 *
 * The most recent release of Palabos can be downloaded at 
 * <http://www.palabos.org/>
 *
 * The library Palabos is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * The library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

/** \file
 * Geometry specifications for 3D multiblocks -- header file.
 */

#ifndef MULTI_BLOCK_MANAGEMENT_3D_H
#define MULTI_BLOCK_MANAGEMENT_3D_H

#include "core/globalDefs.h"
#include "core/geometry3D.h"
#include "multiBlock/threadAttribution.h"
#include "multiBlock/sparseBlockStructure3D.h"
#include "multiBlock/localMultiBlockInfo3D.h"
#include "multiGrid/multiScale.h"
#include <vector>


namespace plb {

class MultiBlockManagement3D {
public:
    MultiBlockManagement3D( SparseBlockStructure3D const& sparseBlock_,
                            ThreadAttribution* threadAttribution_,
                            plint envelopeWidth_,
                            plint refinementLevel_ =0 );
    MultiBlockManagement3D(MultiBlockManagement3D const& rhs);
    MultiBlockManagement3D& operator=(MultiBlockManagement3D const& rhs);
    void swap(MultiBlockManagement3D& rhs);
    ~MultiBlockManagement3D();
    plint getEnvelopeWidth() const;
    Box3D getBoundingBox() const;
    Box3D getBulk(plint blockId) const;
    Box3D getUniqueBulk(plint blockId) const;
    Box3D getEnvelope(plint blockId) const;
    SparseBlockStructure3D const& getSparseBlockStructure() const;
    LocalMultiBlockInfo3D const& getLocalInfo() const;
    ThreadAttribution const& getThreadAttribution() const;
    void setCoProcessors(std::map<plint,int> const& coProcessors);
    bool findInLocalBulk (
            plint iX, plint iY, plint iZ, plint& foundId,
            plint& localX, plint& localY, plint& localZ ) const;
    bool findAllLocalRepresentations (
            plint iX, plint iY, plint iZ, std::vector<plint>& foundId,
            std::vector<plint>& foundX, std::vector<plint>& foundY,
            std::vector<plint>& foundZ ) const;
    plint getRefinementLevel() const;
    void setRefinementLevel(plint newLevel);
private:
    plint                  envelopeWidth;
    SparseBlockStructure3D sparseBlock;
    ThreadAttribution*     threadAttribution;
    LocalMultiBlockInfo3D  localInfo;
    plint                  refinementLevel;
};

MultiBlockManagement3D scale(MultiBlockManagement3D const& originalManagement, plint relativeLevel);

/// Create a new block-management, corresponding to a sub-domain of the old one.
/** If the parameter crop is true, the bounding-box of the new block-management
 * is equal to the specified sub-domain. If crop is false, the bounding-box is
 * the same as the bounding-box of the original block-management.
 */
MultiBlockManagement3D intersect (
        MultiBlockManagement3D const& originalManagement,
        Box3D subDomain, bool crop );

/// Choose yourself the bounding box of the resulting block-management.
MultiBlockManagement3D intersect (
        MultiBlockManagement3D const& originalManagement,
        Box3D subDomain, Box3D newBoundingBox );

/// Create a new block-management as an intersection of the old ones.
/** The bounding box of the result is the intersection of the two original bounding
 *  boxes if crop=true, and the bound of the two otherwise. The block-ids and
 *  the thread-attribution are inherited from management1.
 */
MultiBlockManagement3D intersect( MultiBlockManagement3D const& management1,
                                  MultiBlockManagement3D const& management2, bool crop );

/// Create a new block-management which extends the original one by a given block.
/** Added blocks are default-associated to the mpiProcess "bossId".
 **/
MultiBlockManagement3D extend( MultiBlockManagement3D const& management,
                               Box3D addedBulk, Box3D addedUniqueBulk );

/// Create a new block-management from which a given block is excepted.
MultiBlockManagement3D except( MultiBlockManagement3D const& management,
                               Box3D exceptedBlock );

/// Union of two block-management structures.
/** The block-ids and thread-attribution of management1 are replicated without
 *  modification in the result.
 **/
MultiBlockManagement3D block_union( MultiBlockManagement3D const& management1,
                                    MultiBlockManagement3D const& management2 );

/// Align parallelization of originalManagement so it can be coupled through
///   data processors with partnerManagement.
MultiBlockManagement3D align( MultiBlockManagement3D const& originalManagement,
                              MultiBlockManagement3D const& partnerManagement );

MultiBlockManagement3D align( std::vector<Box3D> const& originalDomain,
                              MultiBlockManagement3D const& alignWith,
                              plint envelopeWidth, plint refinementLevel, bool crop=true );

/// Re-create a block-management by covering the sparse structure with regular blocks.
/** The parameters blockLx, blockLy, and blockLz indicate the approximate size of the
 *  blocks.
 **/
MultiBlockManagement3D reparallelize(MultiBlockManagement3D const& management,
                                     plint blockLx, plint blockLy, plint blockLz);


/// Compute envelope and things alike.
class SmartBulk3D {
public:
    /** The bulk has zero coordinates in case the block id does not exist. **/
    SmartBulk3D( MultiBlockManagement3D const& management,
                 plint blockId );
    /** The bulk has zero coordinates in case the block id does not exist. **/
    SmartBulk3D( SparseBlockStructure3D const& sparseBlock_,
                 plint envelopeWidth_, plint blockId );
    SmartBulk3D( SparseBlockStructure3D const& sparseBlock_,
                 plint envelopeWidth_, Box3D const& bulk_ );
    /// Access the bulk.
    Box3D getBulk() const;
    /// Compute envelope of a given block.
    Box3D computeEnvelope() const;
    /// Compute envelope of a given block, exluding margins of the outer domain.
    Box3D computeNonPeriodicEnvelope() const;
    /// Convert to local coordinates of a given block.
    Box3D toLocal(Box3D const& coord) const;
    /// Convert to local x-coordinate of a given block.
    plint toLocalX(plint iX) const;
    /// Convert to local y-coordinate of a given block.
    plint toLocalY(plint iY) const;
    /// Convert to local z-coordinate of a given block.
    plint toLocalZ(plint iZ) const;
private:
    SparseBlockStructure3D const& sparseBlock;
    plint envelopeWidth;
    Box3D bulk;
};

}  // namespace plb

#endif  // MULTI_BLOCK_MANAGEMENT_3D_H