This file is indexed.

/usr/include/palabos/multiGrid/multiGridManagement2D.h is in libplb-dev 1.5~r1+repack1-2build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
/* This file is part of the Palabos library.
 *
 * Copyright (C) 2011-2015 FlowKit Sarl
 * Route d'Oron 2
 * 1010 Lausanne, Switzerland
 * E-mail contact: contact@flowkit.com
 *
 * The most recent release of Palabos can be downloaded at 
 * <http://www.palabos.org/>
 *
 * The library Palabos is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * The library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

/* Main author: Daniel Lagrava
 **/

/** \file
 * Management of multi grid domains -- Header file
 */

#ifndef MULTI_GRID_MANAGEMENT_2D_H
#define MULTI_GRID_MANAGEMENT_2D_H

#include "core/globalDefs.h"
#include "core/geometry2D.h"
#include "multiGrid/multiScale.h"
#include "multiGrid/parallelizer2D.h"

namespace plb {

class MultiGridManagement2D {
public:
    MultiGridManagement2D(plint coarseNx, plint coarseNy, 
                          plint numLevels, plint overlapWidth_=1, plint referenceLevel=0);
    MultiGridManagement2D(Box2D coarseBoundingBox, plint numLevels,  plint overlapWidth_=1, plint referenceLevel=0);
    
    MultiGridManagement2D(MultiGridManagement2D const& rhs);
    ~MultiGridManagement2D();
    
    void swap(MultiGridManagement2D& rhs);
    
    /// Retrieve the blocks for each level
    std::vector<Box2D> const& getBulks(plint iLevel) const;
    std::vector<std::vector<Box2D> > const& getBulks() const;
    
    /// Retrieve the bounding box at any given level
    Box2D getBoundingBox(plint level) const;
    std::vector<Box2D> const& getBoundingBoxes() const;
    
    /// Add a refinement in level at a given domain
    void refine(plint level, Box2D domain);
    /// Coarsen a given domain in certain level
    void coarsen(plint level, Box2D domain);

    /// Add a refinement patch at a certain level. Leave level unchanged
    void refineMultiGrid(plint level, Box2D domain);
    
    /// Store the overlap coordinates for further usage
    /// Get the Ids of the parallelized regions
    std::vector<std::vector<plint> > const& getMpiProcesses() const;
    
    std::vector<std::vector<Box2D> > const& getCoarseInterface() const;
    std::vector<std::vector<Box2D> > const& getFineInterface() const;
    std::vector<std::vector<Array<plint,2> > > const& getCoarseOrientation() const;
    std::vector<std::vector<Array<plint,2> > > const& getFineOrientation() const;
    
    void trimDomain (plint whichLevel, Box2D& domain,bool& touchLeft, 
                     bool& touchRight, bool& touchBottom, bool& touchTop ) const;

    plint getNumLevels() const;
    plint getReferenceLevel() const;
    plint getOverlapWidth() const;
    
    /// Paralllelize the domain using a certain technique
    void parallelize(Parallelizer2D* parallelizer);
    
    /// Eliminate the redundant fine interfaces
    void eliminateUnnecessaryFineInterfaces();

    friend MultiGridManagement2D extractManagement(MultiGridManagement2D management, Box2D coarsestDomain, bool crop);
    
private:
    void initialize(Box2D const& level0_box);
    void parallelizeLevel(plint whichLevel, std::vector<Box2D> const& parallelRegions, 
                          std::vector<plint> const& regionIDs);

private:
    plint                                overlapWidth;
    plint                                referenceLevel;
    
    /// All the bounding boxes
    std::vector<Box2D>                   boundingBoxes;
    
    /// Cells which form an interface with a grid of next-finer level.
    /** "Interface on which I am a coarse grid." */
    std::vector<std::vector<Box2D> >     coarseGridInterfaces;
    /// Cells which form an interface with a grid of next-coarser level.
    /** "Interface on which I am a fine grid." */
    std::vector<std::vector<Box2D> >     fineGridInterfaces;

    /// Geometry specification: list all atomic-blocks in each multi-block.
    std::vector<std::vector<Box2D> >     bulks;
    
    /// directions and orientations of the regions
    std::vector<std::vector<Array<plint,2> >  > coarseInterfaceOrientations;
    std::vector<std::vector<Array<plint,2> >  > fineInterfaceOrientations;
    
    /// IDs of the blocks, in case the code is parallelized.
    std::vector<std::vector<plint> >     mpiProcess;
    
    MultiScaleManager *scaleManager; 
};

MultiGridManagement2D extractManagement(MultiGridManagement2D management, Box2D coarsestDomain, bool crop=true);


} // namespace plb

#endif  // MULTI_GRID_MANAGEMENT_2D_H