This file is indexed.

/usr/include/palabos/offLattice/generalizedOffLatticeModel3D.h is in libplb-dev 1.5~r1+repack1-2build2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
/* This file is part of the Palabos library.
 *
 * Copyright (C) 2011-2015 FlowKit Sarl
 * Route d'Oron 2
 * 1010 Lausanne, Switzerland
 * E-mail contact: contact@flowkit.com
 *
 * The most recent release of Palabos can be downloaded at 
 * <http://www.palabos.org/>
 *
 * The library Palabos is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * The library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
*/

#ifndef GENERALIZED_OFF_LATTICE_MODEL_3D_H
#define GENERALIZED_OFF_LATTICE_MODEL_3D_H

#include "core/globalDefs.h"
#include "offLattice/offLatticeModel3D.h"

namespace plb {

template<typename T, template<typename U> class Descriptor>
class ExtrapolatedGeneralizedOffLatticeModel3D : public OffLatticeModel3D<T,Array<T,3> >
{
public:
    ExtrapolatedGeneralizedOffLatticeModel3D(BoundaryShape3D<T,Array<T,3> >* shape_, int flowType_);
    ExtrapolatedGeneralizedOffLatticeModel3D(ExtrapolatedGeneralizedOffLatticeModel3D<T,Descriptor> const& rhs);
    ExtrapolatedGeneralizedOffLatticeModel3D<T,Descriptor>& operator=(ExtrapolatedGeneralizedOffLatticeModel3D<T,Descriptor> const& rhs);
    virtual ExtrapolatedGeneralizedOffLatticeModel3D<T,Descriptor>* clone() const;
    virtual plint getNumNeighbors() const;
    virtual void prepareCell (
            Dot3D const& cellLocation, AtomicContainerBlock3D& container );
    virtual void boundaryCompletion (
            AtomicBlock3D& lattice, AtomicContainerBlock3D& container,
            std::vector<AtomicBlock3D const*> const& args );
    virtual ContainerBlockData* generateOffLatticeInfo() const;
    virtual Array<T,3> getLocalForce(AtomicContainerBlock3D& container) const;
private:
    void cellCompletion (
            BlockLattice3D<T,Descriptor>& lattice,
            Dot3D const& genNode,
            std::vector<std::pair<int,int> > const& dryNodeFluidDirections,
            std::vector<int > const& dryNodeFluidNoSolidDirections,
            std::vector<plint> const& dryNodeIds, Dot3D const& absoluteOffset,
            Array<T,3>& localForce );
    void computeVelocity (
              BlockLattice3D<T,Descriptor> const& lattice, Dot3D const& genNode,
              Dot3D const& fluidDirection, int depth, Array<T,3> const& wallNode, T delta,
              Array<T,3> const& wall_vel, OffBoundary::Type bdType, Array<T,3> const& wallNormal,
              Array<T,Descriptor<T>::d>& u) const;
private:
    /// Store the location of wall nodes, as well as the pattern of missing vs. known
    ///   populations.
    class ExtrapolatedGeneralizedOffLatticeInfo3D : public ContainerBlockData {
    public:
        std::vector<Dot3D> const&                               getDryNodes() const
        { return dryNodes; }
        std::vector<Dot3D>&                                     getDryNodes()
        { return dryNodes; }
        std::vector<std::vector<std::pair<int,int> > > const&   getDryNodeFluidDirections() const
        { return dryNodeFluidDirections; }
        std::vector<std::vector<std::pair<int,int> > >&         getDryNodeFluidDirections()
        { return dryNodeFluidDirections; }
        std::vector<std::vector<int> > const&   getDryNodeFluidWithFluidDirections() const
        { return dryNodeFluidNoSolidDirections; }
        std::vector<std::vector<int> >&         getDryNodeFluidWithFluidDirections()
        { return dryNodeFluidNoSolidDirections; }
        std::vector<std::vector<plint> > const&                 getDryNodeIds() const
        { return dryNodeIds; }
        std::vector<std::vector<plint> >&                       getDryNodeIds()
        { return dryNodeIds; }
        Array<T,3> const&                                       getLocalForce() const
        { return localForce; }
        Array<T,3>&                                             getLocalForce()
        { return localForce; }
        virtual ExtrapolatedGeneralizedOffLatticeInfo3D* clone() const {
            return new ExtrapolatedGeneralizedOffLatticeInfo3D(*this);
        }
    private:
        std::vector<Dot3D> dryNodes;
        std::vector<std::vector<std::pair<int,int> > >   dryNodeFluidDirections;
        std::vector<std::vector<int> >   dryNodeFluidNoSolidDirections;
        std::vector<std::vector<plint> >                 dryNodeIds;
        Array<T,3>                                       localForce;
    };
};


template<typename T, template<typename U> class Descriptor>
class InterpolatedGeneralizedOffLatticeModel3D : public OffLatticeModel3D<T,Array<T,3> >
{
public:
    InterpolatedGeneralizedOffLatticeModel3D(BoundaryShape3D<T,Array<T,3> >* shape_, int flowType_);
    InterpolatedGeneralizedOffLatticeModel3D(InterpolatedGeneralizedOffLatticeModel3D<T,Descriptor> const& rhs);
    InterpolatedGeneralizedOffLatticeModel3D<T,Descriptor>& operator=(InterpolatedGeneralizedOffLatticeModel3D<T,Descriptor> const& rhs);
    virtual InterpolatedGeneralizedOffLatticeModel3D<T,Descriptor>* clone() const;
    virtual plint getNumNeighbors() const;
    virtual void prepareCell (
        Dot3D const& cellLocation, AtomicContainerBlock3D& container );
    virtual void boundaryCompletion (
        AtomicBlock3D& lattice, AtomicContainerBlock3D& container,
        std::vector<AtomicBlock3D const*> const& args );
    virtual ContainerBlockData* generateOffLatticeInfo() const;
    virtual Array<T,3> getLocalForce(AtomicContainerBlock3D& container) const;
private:
    void cellCompletion (
        BlockLattice3D<T,Descriptor>& lattice,
        Dot3D const& genNode,
        std::vector<std::pair<int,int> > const& wetNodeSolidDirections,
        std::vector<int > const& wetNodeFluidDirections,
        std::vector<plint> const& wetNodeIds, Dot3D const& absoluteOffset,
        Array<T,3>& localForce );
    void computeVelocity (
        BlockLattice3D<T,Descriptor> const& lattice, Dot3D const& genNode,
        Dot3D const& soldDirection, int depth, Array<T,3> const& wallNode, T wallDistance, T cellDistance,
        Array<T,3> const& wall_vel, OffBoundary::Type bdType, Array<T,3> const& wallNormal,
        Array<T,Descriptor<T>::d>& u) const;
private:
    /// Store the location of wall nodes, as well as the pattern of missing vs. known
    ///   populations.
    class InterpolatedGeneralizedOffLatticeInfo3D : public ContainerBlockData {
    public:
        std::vector<Dot3D> const&                               getWetNodes() const
        { return wetNodes; }
        std::vector<Dot3D>&                                     getWetNodes()
        { return wetNodes; }
        std::vector<std::vector<std::pair<int,int> > > const&   getWetNodeSolidDirections() const
        { return wetNodeSolidDirections; }
        std::vector<std::vector<std::pair<int,int> > >&         getWetNodeSolidDirections()
        { return wetNodeSolidDirections; }
        std::vector<std::vector<int> > const&   getWetNodeFluidDirections() const
        { return wetNodeFluidDirections; }
        std::vector<std::vector<int> >&         getWetNodeFluidDirections()
        { return wetNodeFluidDirections; }
        std::vector<std::vector<plint> > const&                 getWetNodeIds() const
        { return wetNodeIds; }
        std::vector<std::vector<plint> >&                       getWetNodeIds()
        { return wetNodeIds; }
        Array<T,3> const&                                       getLocalForce() const
        { return localForce; }
        Array<T,3>&                                             getLocalForce()
        { return localForce; }
        virtual InterpolatedGeneralizedOffLatticeInfo3D* clone() const {
            return new InterpolatedGeneralizedOffLatticeInfo3D(*this);
        }
    private:
        std::vector<Dot3D> wetNodes;
        std::vector<std::vector<std::pair<int,int> > > wetNodeSolidDirections; // stores the directions where there is a wall and valid neighbors in its opposite direction
        std::vector<std::vector<int> >                 wetNodeFluidDirections; // 
        std::vector<std::vector<plint> >               wetNodeIds;
        Array<T,3>                                     localForce;
    };
};

}  // namespace plb

#endif  // GUO_OFF_LATTICE_MODEL_3D_H