This file is indexed.

/usr/include/root/RooStats/SimpleLikelihoodRatioTestStat.h is in libroot-roofit-dev 5.34.30-0ubuntu8.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
// @(#)root/roostats:$Id$
// Author: Kyle Cranmer and Sven Kreiss    June 2010
/*************************************************************************
 * Copyright (C) 1995-2008, Rene Brun and Fons Rademakers.               *
 * All rights reserved.                                                  *
 *                                                                       *
 * For the licensing terms see $ROOTSYS/LICENSE.                         *
 * For the list of contributors see $ROOTSYS/README/CREDITS.             *
 *************************************************************************/

#ifndef ROOSTATS_SimpleLikelihoodRatioTestStat
#define ROOSTATS_SimpleLikelihoodRatioTestStat

//_________________________________________________
/*
 BEGIN_HTML
 <p>
 SimpleLikelihoodRatioTestStat: TestStatistic that returns -log(L[null] / L[alt]) where
 L is the likelihood.
 </p>
 END_HTML
 */
//

#ifndef ROOT_Rtypes
#include "Rtypes.h"
#endif

#ifndef ROO_NLL_VAR
#include "RooNLLVar.h"
#endif

#ifndef ROO_REAL_VAR
#include "RooRealVar.h"
#endif

#ifndef ROOSTATS_TestStatistic
#include "RooStats/TestStatistic.h"
#endif


namespace RooStats {

   class SimpleLikelihoodRatioTestStat : public TestStatistic {

   public:

      //__________________________________
      SimpleLikelihoodRatioTestStat() :
         fNullPdf(NULL), fAltPdf(NULL)
      {
         // Constructor for proof. Do not use.
         fFirstEval = true;
	     fDetailedOutputEnabled = false;
        fDetailedOutput = NULL;
         fNullParameters = NULL;
         fAltParameters = NULL;
	 fReuseNll=kFALSE ;
	 fNllNull=NULL ;
	 fNllAlt=NULL ;
      }

      //__________________________________
      SimpleLikelihoodRatioTestStat(
         RooAbsPdf& nullPdf,
         RooAbsPdf& altPdf
      ) :
         fFirstEval(true)
      {
         // Takes null and alternate parameters from PDF. Can be overridden.

         fNullPdf = &nullPdf;
         fAltPdf = &altPdf;

         RooArgSet * allNullVars = fNullPdf->getVariables();
         fNullParameters = (RooArgSet*) allNullVars->snapshot();
         delete allNullVars; 

         RooArgSet * allAltVars = fAltPdf->getVariables();
         fAltParameters = (RooArgSet*) allAltVars->snapshot();
         delete allAltVars;

         fDetailedOutputEnabled = false;
         fDetailedOutput = NULL;

	 fReuseNll=kFALSE ;
	 fNllNull=NULL ;
	 fNllAlt=NULL ;
      }
      //__________________________________
      SimpleLikelihoodRatioTestStat(
         RooAbsPdf& nullPdf,
         RooAbsPdf& altPdf,
         const RooArgSet& nullParameters,
         const RooArgSet& altParameters
      ) :
         fFirstEval(true)
      {
         // Takes null and alternate parameters from values in nullParameters
         // and altParameters. Can be overridden.
         fNullPdf = &nullPdf;
         fAltPdf = &altPdf;

         fNullParameters = (RooArgSet*) nullParameters.snapshot();
         fAltParameters = (RooArgSet*) altParameters.snapshot();

         fDetailedOutputEnabled = false;
         fDetailedOutput = NULL;

	 fReuseNll=kFALSE ;
	 fNllNull=NULL ;
	 fNllAlt=NULL ;
      }

      //______________________________
      virtual ~SimpleLikelihoodRatioTestStat() {
         if (fNullParameters) delete fNullParameters;
         if (fAltParameters) delete fAltParameters;
	 if (fNllNull) delete fNllNull ;
	 if (fNllAlt) delete fNllAlt ;
	 if (fDetailedOutput) delete fDetailedOutput;
      }

      static void SetAlwaysReuseNLL(Bool_t flag);

      void SetReuseNLL(Bool_t flag) { fReuseNll = flag ; }

      //_________________________________________
      void SetNullParameters(const RooArgSet& nullParameters) {
         if (fNullParameters) delete fNullParameters;
         fFirstEval = true;
         //      if(fNullParameters) delete fNullParameters;
         fNullParameters = (RooArgSet*) nullParameters.snapshot();
      }

      //_________________________________________
      void SetAltParameters(const RooArgSet& altParameters) {
         if (fAltParameters) delete fAltParameters;
         fFirstEval = true;
         //      if(fAltParameters) delete fAltParameters;
         fAltParameters = (RooArgSet*) altParameters.snapshot();
      }

      //______________________________
      bool ParamsAreEqual() {
         // this should be possible with RooAbsCollection
         if (!fNullParameters->equals(*fAltParameters)) return false;

         RooAbsReal* null;
         RooAbsReal* alt;

         TIterator* nullIt = fNullParameters->createIterator();
         TIterator* altIt = fAltParameters->createIterator();
         bool ret = true;
         while ((null = (RooAbsReal*) nullIt->Next()) && (alt = (RooAbsReal*) altIt->Next())) {
            if (null->getVal() != alt->getVal()) ret = false;
         }
         delete nullIt;
         delete altIt;
         return ret;
      }


      // set the conditional observables which will be used when creating the NLL
      // so the pdf's will not be normalized on the conditional observables when computing the NLL 
      virtual void SetConditionalObservables(const RooArgSet& set) {fConditionalObs.removeAll(); fConditionalObs.add(set);}

      //______________________________
      virtual Double_t Evaluate(RooAbsData& data, RooArgSet& nullPOI);

      virtual void EnableDetailedOutput( bool e=true ) { fDetailedOutputEnabled = e; fDetailedOutput = NULL; }
      virtual const RooArgSet* GetDetailedOutput(void) const { return fDetailedOutput; }

      virtual const TString GetVarName() const {
         return "log(L(#mu_{1}) / L(#mu_{0}))";
      }

   private:

      RooAbsPdf* fNullPdf;
      RooAbsPdf* fAltPdf;
      RooArgSet* fNullParameters;
      RooArgSet* fAltParameters;
      RooArgSet fConditionalObs;
      bool fFirstEval;
      
      bool fDetailedOutputEnabled;
      RooArgSet* fDetailedOutput; //!

      RooAbsReal* fNllNull ;  //! transient copy of the null NLL
      RooAbsReal* fNllAlt ; //!  transient copy of the alt NLL
      static Bool_t fgAlwaysReuseNll ;
      Bool_t fReuseNll ;


   protected:
   ClassDef(SimpleLikelihoodRatioTestStat,3)
};

}

#endif