/usr/include/shogun/statistics/TwoDistributionsTestStatistic.h is in libshogun-dev 3.2.0-7.3build4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 | /*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your option) any later version.
*
* Written (W) 2012-2013 Heiko Strathmann
*/
#ifndef __TwoDistributionsTestStatistic_H_
#define __TwoDistributionsTestStatistic_H_
#include <shogun/statistics/TestStatistic.h>
namespace shogun
{
class CFeatures;
/** @brief Provides an interface for performing
* statistical tests on two sets of samples from two distributions.
* Instances of these tests are the classical two-sample test and the
* independence test. This class may be used as base class for both.
*
* Abstract base class. Provides all interfaces and implements approximating
* the null distribution via bootstrapping, i.e. repeatedly merging both samples
* and them compute the test statistic on them.
*
*/
class CTwoDistributionsTestStatistic : public CTestStatistic
{
public:
CTwoDistributionsTestStatistic();
/** Constructor
*
* @param p_and_q feature data. Is assumed to contain samples from both
* p and q. First all samples from p, then from index q_start all
* samples from q
*
* @param p_and_q samples from p and q, appended
* @param m index of first sample of q
*/
CTwoDistributionsTestStatistic(CFeatures* p_and_q, index_t m);
/** Constructor.
* This is a convienience constructor which copies both features to one
* element and then calls the other constructor. Needs twice the memory
* for a short time
*
* @param p samples from distribution p, will be copied and NOT
* SG_REF'ed
* @param q samples from distribution q, will be copied and NOT
* SG_REF'ed
*/
CTwoDistributionsTestStatistic(CFeatures* p, CFeatures* q);
virtual ~CTwoDistributionsTestStatistic();
/** merges both sets of samples and computes the test statistic
* m_bootstrap_iteration times
*
* @return vector of all statistics
*/
virtual SGVector<float64_t> bootstrap_null();
/** computes a p-value based on current method for approximating the
* null-distribution. The p-value is the 1-p quantile of the null-
* distribution where the given statistic lies in.
*
* @param statistic statistic value to compute the p-value for
* @return p-value parameter statistic is the (1-p) percentile of the
* null distribution
*/
virtual float64_t compute_p_value(float64_t statistic);
/** computes a threshold based on current method for approximating the
* null-distribution. The threshold is the argument of the \f$1-\alpha\f$
* quantile of the null. \f$\alpha\f$ is provided.
*
* @param alpha \f$\alpha\f$ quantile to get the threshold for
* @return threshold which is the \f$1-\alpha\f$ quantile of the null
* distribution
*/
virtual float64_t compute_threshold(float64_t alpha);
/** Setter for joint features
* @param p_and_q joint features from p and q to set
*/
virtual void set_p_and_q(CFeatures* p_and_q);
/** Getter for joint features, SG_REF's
* @return joint feature object
*/
virtual CFeatures* get_p_and_q();
/** @return number of to be used samples m */
index_t get_m() { return m_m; }
virtual const char* get_name() const=0;
private:
void init();
protected:
/** concatenated samples of the two distributions (two blocks) */
CFeatures* m_p_and_q;
/** defines the first index of samples of q */
index_t m_m;
};
}
#endif /* __TwoDistributionsTestStatistic_H_ */
|