This file is indexed.

/usr/include/sofa/component/mass/MatrixMass.h is in libsofa1-dev 1.0~beta4-10ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
#ifndef SOFA_COMPONENT_MASS_MATRIXMASS_H
#define SOFA_COMPONENT_MASS_MATRIXMASS_H



#include <sofa/defaulttype/VecTypes.h>
#include <sofa/core/componentmodel/behavior/Mass.h>
#include <sofa/core/objectmodel/Event.h>
#include <sofa/component/topology/PointData.h>
#include <sofa/helper/vector.h>

namespace sofa
{

	
	
namespace component
{

namespace mass
{


	/**
	Mass Matrices. By default a diagonal matrix is created with diagonal to _defaultValue. Else matrices have to be given in the .scn file.
	It is possible to use lumped matrices.
	*/
	
template <class DataTypes, class MassType>
class MatrixMass : public core::componentmodel::behavior::Mass<DataTypes>
{
public:
    typedef core::componentmodel::behavior::Mass<DataTypes> Inherited;
    typedef typename DataTypes::VecCoord VecCoord;
    typedef typename DataTypes::VecDeriv VecDeriv;
    typedef typename DataTypes::Coord Coord;
    typedef typename DataTypes::Deriv Deriv;
    typedef typename DataTypes::Real Real;

    using Inherited::sout;
    using Inherited::serr;
    using Inherited::sendl;
	typedef helper::vector<MassType> VecMass;


    Data< VecMass > f_mass;
	Data< bool >    _lumped;
	Data< Real >    _defaultValue;
	
	VecMass _lumpedMasses; ///< lumped mass matrices
	
	const VecMass* _usedMassMatrices; ///< what VecMass is used to represent matrices ? f_mass.getValue() or _lumpedMasses ?
	
	

	MatrixMass()
		:  f_mass( this->initData(&f_mass, "massMatrices", "values of the particles masses") )
			, _defaultValue( this->initData(&_defaultValue, (Real)1.0,"defaultValue", "real default value") )
		,_usingDefaultDiagonalMatrices(false)
	{
		_lumped = this->initData( &this->_lumped, false, "lumped", "");
	};

    ~MatrixMass();


    void clear();
	//void addMass(const MassType& mass);
	void resize(int vsize);
	
	
    virtual void init();
	virtual void reinit();
	
	
    // -- Mass interface
    void addMDx(VecDeriv& f, const VecDeriv& dx, double factor = 1.0);

    void accFromF(VecDeriv& a, const VecDeriv& f);

    void addForce(VecDeriv& f, const VecCoord& x, const VecDeriv& v);

	void addGravityToV(double dt/*, defaulttype::BaseVector& v*/);

	double getKineticEnergy(const VecDeriv& v);  ///< vMv/2 using dof->getV()

    double getPotentialEnergy(const VecCoord& x);   ///< Mgx potential in a uniform gravity field, null at origin

    /// Add Mass contribution to global Matrix assembling
    void addMToMatrix(defaulttype::BaseMatrix * mat, double mFact, unsigned int &offset);

    double getElementMass(unsigned int index);

	protected:
		MassType diagonalMass( const Real& m ); ///< return a diagonal matrix mass with value m on all the diagonal
		MassType lump( const MassType& m ); ///< lump the matrix m, ie sum line on diagonal
		void lumpMatrices( ); ///< lump all mass matrices
		void defaultDiagonalMatrices( ); ///< compute default diagonal matrices
		bool _usingDefaultDiagonalMatrices; ///< default diagonal matrices are used
	
};

} // namespace mass

} // namespace component

} // namespace sofa

#endif