This file is indexed.

/usr/include/sofa/component/topology/EdgeSubsetData.h is in libsofa1-dev 1.0~beta4-10ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
#ifndef SOFA_COMPONENT_TOPOLOGY_EDGESUBSETDATA_H
#define SOFA_COMPONENT_TOPOLOGY_EDGESUBSETDATA_H

#include <sofa/core/componentmodel/topology/BaseMeshTopology.h>
#include <map>

namespace sofa
{

namespace component
{

namespace topology
{
	using core::componentmodel::topology::BaseMeshTopology;
	typedef BaseMeshTopology::Edge Edge;

	/** \brief Basic creation function for element of type T : simply calls default constructor.
	*
	*/
	template < typename T >
	inline void ed_basicCreateFunc(unsigned int , 
								void* , T& t, 
								const Edge& ,  
								const std::vector< unsigned int > &,
								const std::vector< double >&)
	{
		t = T();
		//return;
	}

	/** \brief Basic destruction function for element of type T : does nothing.
	*
	*/
	template < typename T >
	inline void ed_basicDestroyFunc(unsigned int , void* , T& )
	{
		return;
	}

	/** \brief A class for storing Edge related data. Automatically manages topology changes.
	*
	* This class is a wrapper of class helper::vector that is made to take care transparently of all topology changes that might
	* happen (non exhaustive list: Edges added, removed, fused, renumbered).
	*/
	template< class T > 
	class EdgeSubsetData : public std::map<unsigned int,T> 
	{
	public:
		/// size_type
		typedef typename std::map<unsigned int,T>::size_type size_type;
		/// reference to a value (read-write)
		typedef typename std::map<unsigned int,T>::reference reference;
		/// const reference to a value (read only)
		typedef typename std::map<unsigned int,T>::const_reference const_reference;

	public:
		/// Constructor
		EdgeSubsetData(size_type n, const T& value): std::map<unsigned int,T>(n,value) {}
		/// Constructor
		EdgeSubsetData(int n, const T& value): std::map<unsigned int,T>(n,value) {}
		/// Constructor
		EdgeSubsetData(long n, const T& value): std::map<unsigned int,T>(n,value) {}
		/// Constructor
		explicit EdgeSubsetData(size_type n): std::map<unsigned int,T>(n) {}
		/// Constructor
		EdgeSubsetData(const std::map<unsigned int,T>& x): std::map<unsigned int,T>(x) {}

#ifdef __STL_MEMBER_TEMPLATES
		/// Constructor
		template <class InputIterator>
		EdgeSubsetData(InputIterator first, InputIterator last): std::map<unsigned int,T>(first,last){}
#else /* __STL_MEMBER_TEMPLATES */
		/// Constructor
		EdgeSubsetData(typename EdgeSubsetData<T>::const_iterator first, typename EdgeSubsetData<T>::const_iterator last): std::map<unsigned int,T>(first,last){}
#endif /* __STL_MEMBER_TEMPLATES */

		/// Optionnaly takes 2 parameters, a creation and a destruction function that will be called when adding/deleting elements.
		EdgeSubsetData( void (*createFunc) (unsigned int, void*, T&, const Edge &,const std::vector< unsigned int >&, const std::vector< double >&) = ed_basicCreateFunc,  
						void* createParam  = (void*)NULL, 
						void (*destroyFunc)(unsigned int, void*, T&                                     ) = ed_basicDestroyFunc, 
						void* destroyParam = (void*)NULL ) 
		: std::map<unsigned int,T>(), 
		m_createFunc(createFunc), m_destroyFunc(destroyFunc), 
		m_createTriangleFunc(0), m_destroyTriangleFunc(0), 
		m_createTetrahedronFunc(0), m_destroyTetrahedronFunc(0), 
		m_createParam(createParam), m_destroyParam(destroyParam),
		lastEdgeIndex(0)
		{}

		/// Handle EdgeSetTopology related events, ignore others.
		void handleTopologyEvents( std::list< const core::componentmodel::topology::TopologyChange *>::const_iterator changeIt, 
								std::list< const core::componentmodel::topology::TopologyChange *>::const_iterator &end ,
								const unsigned int totalEdgeSetArraySize);

		void setCreateFunction(void (*createFunc )(unsigned int, void*, T&, const Edge&, const std::vector< unsigned int >&, const std::vector< double>& )) 
		{
			m_createFunc=createFunc;
		}

		void setDestroyFunction( void (*destroyFunc)(unsigned int, void*, T&) ) 
		{
			m_destroyFunc=destroyFunc;
		}

		void setDestroyParameter( void* destroyParam ) 
		{
			m_destroyParam=destroyParam;
		}

		void setCreateParameter( void* createParam ) 
		{
			m_createParam=createParam;
		}

		void setCreateTriangleFunction(	void (*createTriangleFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &) ) 
		{
			m_createTriangleFunc=createTriangleFunc;
		}

		void setDestroyTriangleFunction(void (*destroyTriangleFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &) ) 
		{
			m_destroyTriangleFunc=destroyTriangleFunc;
		}

		void setCreateQuadFunction(	void (*createQuadFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &) ) 
		{
			m_createQuadFunc=createQuadFunc;
		}

		void setDestroyQuadFunction(void (*destroyQuadFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &) ) 
		{
			m_destroyQuadFunc=destroyQuadFunc;
		}

		void setCreateTetrahedronFunction(	void (*createTetrahedronFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T >&) ) 
		{
			m_createTetrahedronFunc=createTetrahedronFunc;
		}

		void setDestroyTetrahedronFunction(void (*destroyTetrahedronFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &) ) 
		{
			m_destroyTetrahedronFunc=destroyTetrahedronFunc;
		}

	private:
		/// Add some values. Values are added at the end of the vector.
		void add( unsigned int nbEdges,
				const sofa::helper::vector< Edge >& edge,
				const sofa::helper::vector< sofa::helper::vector< unsigned int > > &ancestors, 
				const sofa::helper::vector< sofa::helper::vector< double > >& coefs);

		/// Remove the values corresponding to the Edges removed.
		void remove( const std::vector<unsigned int> &index );

		void setTotalEdgeSetArraySize(const unsigned int s) 
		{
			lastEdgeIndex=s-1;
		}

	private:
		/// Creation function, called when adding elements.
		void (*m_createFunc)(unsigned int, void*, T&, const Edge&, const std::vector< unsigned int >&, const std::vector< double >& );

		/// Destruction function, called when deleting elements.
		void (*m_destroyFunc)(unsigned int, void*, T&);

		/// Creation function, called when adding triangles elements.
		void (*m_createTriangleFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &);

		/// Destruction function, called when removing triangles elements.
		void (*m_destroyTriangleFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T >&);

		/// Creation function, called when adding quads elements.
		void (*m_createQuadFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &);

		/// Destruction function, called when removing quads elements.
		void (*m_destroyQuadFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T >&);

		/// Creation function, called when adding tetrahedra elements.
		void (*m_createTetrahedronFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T >&);

		/// Destruction function, called when removing tetrahedra elements.
		void (*m_destroyTetrahedronFunc)(const std::vector<unsigned int> &, void*,  std::map<unsigned int, T > &);

		/** Parameter to be passed to creation function.
		*
		* Warning : construction and destruction of this object is not of the responsibility of EdgeSubsetData.
		*/
		void* m_createParam;

		/** Parameter to be passed to destruction function.
		*
		* Warning : construction and destruction of this object is not of the responsibility of EdgeSubsetData.
		*/
		void* m_destroyParam;
		/// to handle properly the removal of items, the container must know the index of the last element
		unsigned int lastEdgeIndex;
	};

} // namespace topology

} // namespace component

} // namespace sofa

#endif // _EdgeSubsetDATA_H_