This file is indexed.

/usr/include/trilinos/Ifpack_Euclid.h is in libtrilinos-ifpack-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
/*@HEADER
// ***********************************************************************
//
//       Ifpack: Object-Oriented Algebraic Preconditioner Package
//                 Copyright (2002) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/

#ifndef IFPACK_EUCLID_H
#define IFPACK_EUCLID_H

#include "Ifpack_ConfigDefs.h"
#ifdef HAVE_EUCLID

#include "Ifpack_Condest.h"
#include "Ifpack_ScalingType.h"
#include "Epetra_CompObject.h"
#include "Epetra_MultiVector.h"
#include "Epetra_Vector.h"
#include "Epetra_CrsGraph.h"
#include "Epetra_CrsMatrix.h"
#include "Epetra_BlockMap.h"
#include "Epetra_Map.h"
#include "Epetra_Object.h"
#include "Epetra_Comm.h"
#include "Epetra_CrsMatrix.h"
#include "Epetra_Time.h"
#include "Teuchos_RefCountPtr.hpp"
#include "Teuchos_ParameterList.hpp"
#include "Epetra_MpiComm.h"

#include "Mem_dh.h"
#include "io_dh.h"
#include "TimeLog_dh.h"
#include "Parser_dh.h"
#include "Euclid_dh.h"

namespace Teuchos {
  class ParameterList;
}

//! Ifpack_Euclid: A class for constructing and using an ILU factorization of a given Epetra_CrsMatrix, using the Euclid library by Argonne National Laboratories.

/*!
  Class Ifpack_Euclid can use the euclid preconditioner as used in Hypre library.
*/

  //The other files that were modified for Trilinos are getRow.c, call_epetra.{cpp,h}.

class Ifpack_Euclid: public Epetra_Object, public Epetra_CompObject, public virtual Epetra_Operator {

  friend std::ostream& operator << (std::ostream& os, const Ifpack_Euclid& A);

public:
  // @{ Constructors and destructors.
  //! Constructor
  Ifpack_Euclid(Epetra_CrsMatrix* A);

  //! Destructor
  ~Ifpack_Euclid(){ Destroy();}

  // @}
  // @{ Construction methods

  //! Initialize the preconditioner, does not touch matrix values.
  int Initialize();

  //! Returns \c true if the preconditioner has been successfully initialized.
  bool IsInitialized() const{ return(IsInitialized_);}

  //! Compute ILU factors L and U using the specified graph, diagonal perturbation thresholds and relaxation parameters.
  /*! This function computes the ILU(k) factors.
   */
  int Compute();

  //! If factor is completed, this query returns true, otherwise it returns false.
  bool IsComputed() const{ return(IsComputed_);}


  //! Set parameters using a Teuchos::ParameterList object.
  /*! This method is only available if the Teuchos package is enabled.
  \param ParameterList (In) - The Parameter list. Options are:
       SetLevel (int)
       SetBJ (int)
       SetStats (int)
       SetMem (int)
       SetSparse (double)
       SetRowScale (int)
       SetILUT (double)

  \return Integer error code, set to 0 if successful.
  */
  int SetParameters(Teuchos::ParameterList& parameterlist);

  //! Set a parameter that takes a single int.
  /*!
  \param name (In) -The parameter that is getting set.
  \param Value (In) -An integer value corresponding to the parameter.

  \return Integer error code, set to 0 if successful.
 */
  int SetParameter(std::string name, int Value);

  //! Set a parameter that takes a single double.
  /*!
  \param name (In) -The parameter that is getting set.
  \param Value (In) -A double value corresponding to the parameter.

  \return Integer error code, set to 0 if successful.
  */
  int SetParameter(std::string name, double Value);

  //! If parameter is true, will use transpose operations.
  int SetUseTranspose(bool UseTranspose_in) {UseTranspose_ = UseTranspose_in; return(0);};
  // @}

  // @{ Mathematical functions.
  // Applies the matrix to X, returns the result in Y.
  int Apply(const Epetra_MultiVector& X,
               Epetra_MultiVector& Y) const{ return(Multiply(false,X,Y));}

  //! Returns the result of a Epetra_Operator multiplied with an Epetra_MultiVector X in Y.
  /*! This calls the multiply function on the stored matrix.

    \param
      trans - (In) If true, use do a transpose multiply.
           X - (In) A Epetra_MultiVector of dimension NumVectors to multiply with.
    \param Out
           Y - (Out) A Epetra_MultiVector of dimension NumVectors containing result.

    \return Integer error code, set to 0 if successful. -1 if compute() hasn't been called. -2 if the multivectors have differing numbers of vectors.
  */
  int Multiply(bool Trans, const Epetra_MultiVector& X, Epetra_MultiVector& Y) const{ return A_->Multiply(Trans, X, Y); }

  //! Returns the result of a Epetra_Operator inverse applied to an Epetra_MultiVector X in Y.
  /*! In this implementation, we use several existing attributes to determine how virtual
      method ApplyInverse() should call the concrete method Solve().  We pass in the UpperTriangular(),
      the Epetra_CrsMatrix::UseTranspose(), and NoDiagonal() methods. The most notable warning is that
      if a matrix has no diagonal values we assume that there is an implicit unit diagonal that should
      be accounted for when doing a triangular solve.

    \param
           X - (In) A Epetra_MultiVector of dimension NumVectors to solve for.
    \param Out
           Y - (Out) A Epetra_MultiVector of dimension NumVectors containing result.

    \return Integer error code, set to 0 if successful. -1 if compute() hasn't been called. -2 if the multivectors have differing numbers of vectors.
  */
  int ApplyInverse(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const;

  //! Computes the estimated condition number and returns the value.
  double Condest(const Ifpack_CondestType CT = Ifpack_Cheap,  const int MaxIters = 1550,
                 const double Tol = 1e-9, Epetra_RowMatrix* Matrix_in = 0);

  //! Returns the computed estimated condition number, or -1.0 if not computed.
  double Condest() const{ return(Condest_);}

  // @}
  // @{ Query methods

  //! Returns a character string describing the operator
  const char* Label() const {return(Label_);}

  //! Sets label for \c this object.
  void SetLabel(const char* Label_in){ strcpy(Label_,Label_in);}

  //! Returns the domain map from the creating matrix.
  const Epetra_Map &OperatorDomainMap() const{return A_->DomainMap();}

  //! Returns the range map from the creating matrix.
  const Epetra_Map &OperatorRangeMap() const{return A_->RangeMap();}

  //! Returns 0.0 because this class cannot compute Inf-norm.
  double NormInf() const {return(0.0);};

  //! Returns false because this class cannot compute an Inf-norm.
  bool HasNormInf() const {return(false);};

  //! Returns the current UseTranspose setting.
  bool UseTranspose() const {return(UseTranspose_);};

  //! Returns the Epetra_BlockMap object associated with the range of this matrix operator.
  const Epetra_Comm & Comm() const{return(A_->Comm());};

  //! Returns a reference to the matrix to be preconditioned.
  const Epetra_CrsMatrix& Matrix() const{ return(*A_);}

  //! Returns the number of calls to Initialize().
  virtual int NumInitialize() const{ return(NumInitialize_);}

  //! Returns the number of calls to Compute().
  virtual int NumCompute() const{ return(NumCompute_);}

  //! Returns the number of calls to ApplyInverse().
  virtual int NumApplyInverse() const{ return(NumApplyInverse_);}

  //! Returns the time spent in Initialize().
  virtual double InitializeTime() const{ return(InitializeTime_);}

  //! Returns the time spent in Compute().
  virtual double ComputeTime() const{ return(ComputeTime_);}

  //! Returns the time spent in ApplyInverse().
  virtual double ApplyInverseTime() const{ return(ApplyInverseTime_);}

  //! Returns the number of flops in the initialization phase.
  virtual double InitializeFlops() const{ return(0.0);}

  //! Returns the number of flops in the compute phase.
  virtual double ComputeFlops() const{ return(ComputeFlops_);}

  //! Returns the number of flops in the applyinverse phase.
  virtual double ApplyInverseFlops() const{ return(ApplyInverseFlops_);}

private:

  // @}
  // @{ Private methods

  //! Copy constructor (should never be used)
  Ifpack_Euclid(const Ifpack_Euclid& RHS) : Time_(RHS.Comm()){}

  //! operator= (should never be used)
  Ifpack_Euclid& operator=(const Ifpack_Euclid& RHS){ return(*this);}

  //! Destroys all internal data
  void Destroy();

  //! Returns the MPI comm used in the matrix that created the preconditioner.
  MPI_Comm GetMpiComm() const{ return (dynamic_cast<const Epetra_MpiComm*>(&A_->Comm()))->GetMpiComm();}

  //! Internal method to call the euclid solve method.
  int CallEuclid(double *x, double *y) const;

  //! Returns the result of a Ifpack_ILU forward/back solve on a Epetra_MultiVector X in Y.
  /*!
    \param In
    Trans -If true, solve transpose problem.
    \param
    X - (In) A Epetra_MultiVector of dimension NumVectors to solve for.
    \param Out
    Y - (Out) A Epetra_MultiVector of dimension NumVectorscontaining result.

    \return Integer error code, set to 0 if successful.
  */
  int Solve(bool Trans, const Epetra_MultiVector& X, Epetra_MultiVector& Y) const;

  //! Returns the number of global matrix rows.
  int NumGlobalRows() const {return(A_->NumGlobalRows());};

  //! Returns the number of global matrix columns.
  int NumGlobalCols() const {return(A_->NumGlobalCols());};

  //! Returns the number of local matrix rows.
  int NumMyRows() const {return(A_->NumMyRows());};

  //! Returns the number of local matrix columns.
  int NumMyCols() const {return(A_->NumMyCols());};

  // @}
  // @{ Internal data

  //! Pointer to the Epetra_CrsMatrix to factorize
  Teuchos::RefCountPtr<Epetra_CrsMatrix> A_;
  //! This objects copy of the ParamterList.
  Teuchos::ParameterList List_;
  //! If true, use transpose operator operations.
  bool UseTranspose_;
  //! The condition estimate for this preconditioner, will be -1 for now.
  double Condest_;
  //! If \c true, the preconditioner has been successfully initialized.
  bool IsInitialized_;
  //! If \c true, the preconditioner has been successfully computed.
  bool IsComputed_;
  //! Label of \c this object.
  char Label_[160];
  //! Contains the number of successful calls to Initialize().
  int NumInitialize_;
  //! Contains the number of successful call to Compute().
  int NumCompute_;
  //! Contains the number of successful call to ApplyInverse().
  mutable int NumApplyInverse_;
  //! Contains the time for all successful calls to Initialize().
  double InitializeTime_;
  //! Contains the time for all successful calls to Compute().
  double ComputeTime_;
  //! Contains the time for all successful calls to ApplyInverse().
  mutable double ApplyInverseTime_;
  //! Contains the number of flops for Compute().
  double ComputeFlops_;
  //! Contain sthe number of flops for ApplyInverse().
  mutable double ApplyInverseFlops_;
  //! Used for timing issues.
  mutable Epetra_Time Time_;
  //! This is the Euclid solver.
  Euclid_dh eu;
  //! Set livel k for ILU(k) factorization
  int SetLevel_;
  //! block-jacobi solver
  int SetBJ_;
  //! print stats
  int SetStats_;
  //! print memory usage information
  int SetMem_;
  //! define drop-tolerance
  double SetSparse_;
  //! scale values prior to factorization
  int SetRowScale_;
  //! drop tolerance relative to the absolute value of any entry in the row being factored
  double SetILUT_;
};

//! This is the print function.
std::ostream& operator << (std::ostream& os, const Ifpack_Euclid& A);

#endif // HAVE_EUCLID
#endif /* IFPACK_EUCLID_H */