/usr/include/trilinos/MLAPI_SerialMatrix.h is in libtrilinos-ml-dev 12.4.2-2.
This file is owned by root:root, with mode 0o644.
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#define MLAPI_SERIALMATRIX_H
/*!
\file MLAPI_SerialMatrix.h
\brief MATLAB-like serial matrix.
\author Marzio Sala, D-INFK/ETHZ.
\date Last updated on Mar-06.
*/
/* ******************************************************************** */
/* See the file COPYRIGHT for a complete copyright notice, contact */
/* person and disclaimer. */
/* ******************************************************************** */
#include "ml_common.h"
#include "ml_include.h"
//#include "ml_lapack.h"
#include "ml_comm.h"
#include "MLAPI_Error.h"
#include "MLAPI_Space.h"
#include "MLAPI_Operator.h"
#include "Epetra_Vector.h"
#include "Epetra_RowMatrix.h"
#include "Teuchos_RefCountPtr.hpp"
#include <iomanip>
namespace MLAPI {
class Epetra_SerialMatrix : public Epetra_RowMatrix {
public:
Epetra_SerialMatrix(const Space& RowSpace, const Space& ColSpace)
{
NumMyRows_ = RowSpace.GetNumMyElements();
NumMyCols_ = ColSpace.GetNumMyElements();
NumMyNonzeros_ = 0;
NumMyDiagonals_ = 0;
if (GetNumProcs() != 1)
ML_THROW("Class SerialMatrix can only be used for serial computations.", -1);
RowMap_ = Teuchos::rcp(new Epetra_Map(NumMyRows_,0,GetEpetra_Comm()));
ColMap_ = Teuchos::rcp(new Epetra_Map(NumMyCols_,0,GetEpetra_Comm()));
ptr_.resize(NumMyRows_);
}
virtual int NumMyRowEntries(int MyRow, int & NumEntries) const
{
#ifdef MLAPI_CHECK
if (MyRow < 0 || MyRow >= NumMyRows())
ML_THROW("Requested not valid row (" + GetString(MyRow) +").", -1);
#endif
NumEntries = ptr_[MyRow].size();
return(0);
}
virtual int MaxNumEntries() const
{
int res = 0, res_i = 0;
for (int i = 0 ; i < NumMyRows() ; ++i) {
NumMyRowEntries(i, res_i);
if (res_i > res)
res = res_i;
}
return(res);
}
virtual int ExtractMyRowCopy(int MyRow, int Length, int & NumEntries,
double *Values, int * Indices) const
{
NumMyRowEntries(MyRow, NumEntries);
if (Length < NumEntries) ML_CHK_ERR(-1);
if (MyRow < 0 || MyRow >= NumMyRows())
ML_CHK_ERR(-2);
int count = 0;
for (where_ = ptr_[MyRow].begin() ; where_ != ptr_[MyRow].end() ; ++where_) {
Indices[count] = where_->first;
Values[count] = where_->second;
++count;
}
return(0);
}
virtual int ExtractDiagonalCopy(Epetra_Vector & Diagonal) const
{
#ifdef MLAPI_CHECK
if (!Diagonal.Map().SameAs(RowMatrixRowMap()))
ML_CHK_ERR(-1);
#endif
Diagonal.PutScalar(0.0);
for (int i = 0 ; i < NumMyRows() ; ++i) {
for (where_ = ptr_[i].begin() ; where_ != ptr_[i].end() ; ++where_) {
if (where_->first == i) {
Diagonal[i] = where_->second;
break;
}
}
}
return(0);
}
virtual int Multiply(bool TransA, const Epetra_MultiVector& X,
Epetra_MultiVector& Y) const
{
Y.PutScalar(0.0);
if (!TransA) {
for (int v = 0 ; v < X.NumVectors() ; ++v) {
for (int i = 0 ; i < NumMyRows() ; ++i) {
for (where_ = ptr_[i].begin() ; where_ != ptr_[i].end() ; ++where_) {
Y[v][i] += (where_->second) * X[v][where_->first];
}
}
}
}
else {
for (int v = 0 ; v < X.NumVectors() ; ++v) {
for (int i = 0 ; i < NumMyRows() ; ++i) {
for (where_ = ptr_[i].begin() ; where_ != ptr_[i].end() ; ++where_) {
Y[v][where_->first] += (where_->second) * X[v][i];
}
}
}
}
return(0);
}
virtual int Solve(bool Upper, bool Trans, bool UnitDiagonal, const Epetra_MultiVector& X,
Epetra_MultiVector& Y) const
{
ML_CHK_ERR(-1);
}
virtual int InvRowSums(Epetra_Vector& x) const
{
ML_CHK_ERR(-1);
}
virtual int LeftScale(const Epetra_Vector& x)
{
ML_CHK_ERR(-1);
}
virtual int InvColSums(Epetra_Vector& x) const
{
ML_CHK_ERR(-1);
}
virtual int RightScale(const Epetra_Vector& x)
{
ML_CHK_ERR(-1);
}
virtual bool Filled() const
{
return(true);
}
virtual double NormInf() const
{
ML_CHK_ERR(-1);
}
virtual double NormOne() const
{
ML_CHK_ERR(-1);
}
#ifndef EPETRA_NO_32BIT_GLOBAL_INDICES
virtual int NumGlobalNonzeros() const
{
return(NumMyNonzeros_);
}
virtual int NumGlobalRows() const
{
return(NumMyRows_);
}
virtual int NumGlobalCols() const
{
return(NumMyCols_);
}
virtual int NumGlobalDiagonals() const
{
return(NumMyDiagonals_);
}
#endif
virtual long long NumGlobalNonzeros64() const
{
return(NumMyNonzeros_);
}
virtual long long NumGlobalRows64() const
{
return(NumMyRows_);
}
virtual long long NumGlobalCols64() const
{
return(NumMyCols_);
}
virtual long long NumGlobalDiagonals64() const
{
return(NumMyDiagonals_);
}
virtual int NumMyNonzeros() const
{
return(NumMyNonzeros_);
}
virtual int NumMyRows() const
{
return(NumMyRows_);
}
virtual int NumMyCols() const
{
return(NumMyCols_);
}
virtual int NumMyDiagonals() const
{
return(NumMyDiagonals_);
}
virtual bool LowerTriangular() const
{
return(false);
}
virtual bool UpperTriangular() const
{
return(false);
}
virtual const Epetra_Map & RowMatrixRowMap() const
{
return(*(RowMap_.get()));
}
virtual const Epetra_Map & RowMatrixColMap() const
{
return(*(ColMap_.get()));
}
virtual const Epetra_Import * RowMatrixImporter() const
{
return(0);
}
virtual const Epetra_Map& OperatorDomainMap() const
{
return(*(ColMap_.get()));
}
virtual const Epetra_Map& OperatorRangeMap() const
{
return(*(RowMap_.get()));
}
virtual const Epetra_Map& Map() const
{
return(*(ColMap_.get()));
}
//@}
virtual int SetUseTranspose(bool)
{
ML_CHK_ERR(-1);
}
virtual int Apply(const Epetra_MultiVector& X, Epetra_MultiVector& Y) const
{
return(Multiply(false, X, Y));
}
virtual int ApplyInverse(const Epetra_MultiVector& X,
Epetra_MultiVector& Y) const
{
ML_CHK_ERR(-1);
}
virtual const char* Label() const
{
return("Epetra_SerialMatrix");
}
virtual bool UseTranspose() const
{
return(false);
}
virtual bool HasNormInf() const
{
return(false);
}
virtual const Epetra_Comm& Comm() const
{
return(GetEpetra_Comm());
}
inline double& operator()(const int row, const int col)
{
#ifdef MLAPI_CHECK
if (row < 0 || row >= NumMyRows())
ML_THROW("Requested not valid row (" + GetString(row) +").", -1);
if (col < 0 || row >= NumMyCols())
ML_THROW("Requested not valid column (" + GetString(col) +").", -1);
#endif
where_ = ptr_[row].find(col);
if (where_ != ptr_[row].end())
// return a reference to this guy
return(where_->second);
else {
ptr_[row][col] = 0.0;
// track number of stored elements
++NumMyNonzeros_;
// track number of diagonals
if (row == col)
++NumMyDiagonals_;
// return a reference to this guy
return(ptr_[row][col]);
}
}
private:
Epetra_SerialMatrix(const Epetra_SerialMatrix& rhs)
{
}
Epetra_SerialMatrix& operator=(const Epetra_SerialMatrix& rhs)
{
return(*this);
}
int NumMyRows_;
int NumMyCols_;
int NumMyDiagonals_;
int NumMyNonzeros_;
mutable std::map<int,double>::iterator where_;
mutable std::vector<std::map<int,double> > ptr_;
Teuchos::RefCountPtr<Epetra_Map> RowMap_;
Teuchos::RefCountPtr<Epetra_Map> ColMap_;
}; // class Epetra_SerialMatrix
class SerialMatrix : public Operator
{
public:
SerialMatrix()
{
Matrix_ = 0;
}
SerialMatrix& operator()(const SerialMatrix& rhs)
{
Matrix_ = rhs.Matrix_;
Operator::operator=(rhs);
return(*this);
}
SerialMatrix(const Space& RowSpace, const Space& ColSpace)
{
Matrix_ = new Epetra_SerialMatrix(RowSpace, ColSpace);
Reshape(RowSpace, ColSpace, Matrix_, true);
}
inline double& operator()(const int row, const int col)
{
return((*Matrix_)(row, col));
}
std::ostream& Print(std::ostream& os, const bool verbose = true) const
{
int Length = Matrix_->MaxNumEntries();
std::vector<double> Values(Length);
std::vector<int> Indices(Length);
os << std::endl;
os << "*** MLAPI::SerialMatrix ***" << std::endl;
os << "Label = " << GetLabel() << std::endl;
os << "Number of rows = " << Matrix_->NumMyRows() << std::endl;
os << "Number of columns = " << Matrix_->NumMyCols() << std::endl;
os << std::endl;
os.width(10); os << "row ID";
os.width(10); os << "col ID";
os.width(30); os << "value";
os << std::endl;
os << std::endl;
for (int i = 0 ; i < Matrix_->NumMyRows() ; ++i) {
int NnzRow = 0;
Matrix_->ExtractMyRowCopy(i, Length, NnzRow, &Values[0], &Indices[0]);
for (int j = 0 ; j < NnzRow ; ++j) {
os.width(10); os << i;
os.width(10); os << Indices[j];
os.width(30); os << Values[j];
os << std::endl;
}
}
return(os);
}
private:
Epetra_SerialMatrix* Matrix_;
};
} // namespace MLAPI
#endif // ifndef MLAPI_SERIALMATRIX_H
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