This file is indexed.

/usr/include/trilinos/ml_struct.h is in libtrilinos-ml-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
/* ******************************************************************** */
/* See the file COPYRIGHT for a complete copyright notice, contact      */
/* person and disclaimer.                                               */
/* ******************************************************************** */

/* ******************************************************************** */
/* Declaration of the ML structure                                      */
/* ******************************************************************** */
/* Author        : Charles Tong (LLNL) and Raymond Tuminaro (SNL)       */
/* Date          : March, 1999                                          */
/* ******************************************************************** */

#ifndef __MLSTRUCT__
#define __MLSTRUCT__

/* ******************************************************************** */
/* data structure type definition                                       */
/* ******************************************************************** */

typedef struct ML_Struct ML;

/* ******************************************************************** */
/* local include files                                                  */
/* ******************************************************************** */

#include "ml_common.h"
#include "ml_defs.h"
#include "ml_bdrypts.h"
#include "ml_mapper.h"
#include "ml_grid.h"
#include "ml_smoother.h"
#include "ml_comminfoop.h"
#include "ml_1level.h"
#include "ml_operator.h"
#include "ml_csolve.h"
#include "ml_operatoragx.h"
#include "ml_comm.h"
#include "ml_gridfunc.h"
#include "ml_vec.h"
#include "ml_rap.h"
#include "ml_utils.h"
#include "ml_mat_formats.h"
#include "ml_solver.h"
#include "ml_krylov.h"
#include "ml_mat_formats.h"
#include "ml_amg.h"
#include "ml_aggregate.h"
#include "ml_mls.h"
#include <string.h>
#include "ml_qr_fix.h"

#ifdef WKC
/* WKC -- added header(s) for the new datastructures */
#include <Epetra_MultiVector.h>
#include <Epetra_LocalMap.h>
#endif

#include "ml_petsc.h"

/* ******************************************************************** */
/* ******************************************************************** */
/* data definition for the ML Class                                     */
/* ******************************************************************** */
/* -------------------------------------------------------------------- */
/** This is the primary data structure which users interact directly
    with via the provided functions.
   -------------------------------------------------------------------- */

struct ML_Struct {
   int            id;
   char           *label;          /**< optional character label     */
   int            ML_init_flag;    /**< indicate initialization done */
   int            ML_scheme;       /**< which ML scheme to pick      */
   int            ML_num_levels;   /**< number of levels available   */
   int            ML_num_actual_levels;
                                   /**< number of levels actually used */
                                   /**< by the multigrid method.       */
   int            ML_num_transfers;/**< number of transfers  */
   int            ML_finest_level, ML_coarsest_level;
   int            *LevelID;       /* Same idea as MultiLevelPreconditioner().
                                     Logically, levels run from 0,...,L, where
                                     0 is the finest level and L is the
                                     coarsest.  Internally, the fine level's
                                     array index is LevelID[0], and the coarse
                                     level L's array index is LevelID[L]. */
   int            RAP_storage_type; /* ML_MSR_MATRIX or ML_CSR_MATRIX*/
   int            symmetrize_matrix;
   int            output_level;
   int            res_output_freq;
   int            MinPerProc_repartition;
   int            PutOnSingleProc_repartition;
   double         LargestMinMaxRatio_repartition;
   int            use_repartitioning; /* turn repartitioning [off]/on */
   int            repartitionStartLevel; /* used to suppress repartitioning until a certain level*/
   ML_Partitioner partitioner; /*which partitioner to use: zoltan,parmetis,jostle */
   double         tolerance;
   int            max_iterations;
   double         *spectral_radius;
   ML_Smoother    *pre_smoother;
   ML_Smoother    *post_smoother;
   ML_CSolve      *csolve;
   ML_Operator    *Amat, *Rmat, *Pmat;
   ML_Grid        *Grid;
   ML_BdryPts     *BCs;
   ML_Mapper      *eqn2grid;
   ML_Mapper      *grid2eqn;
   ML_1Level      *SingleLevel;
   ML_DVector     *Amat_Normalization;
   struct ML_Timing
                  *timing;       /**< Used for timing information.    */
   ML_Comm        *comm;         /**< communicator for ML             */
   int            *int_options;  /**< optional integer parameters     */
   double         *dble_options; /**< optional double parameters      */
   void           *void_options; /**< optional other parameters       */
   int            (*func)(void); /**< optional function               */
   double         Cheby_eig_boost; /* used to bump largest eigenvalue */
                                   /* estimate for Cheby. smoothing.  */
};
struct ML_Timing {
   double precond_apply_time;
   double         total_build_time;
};

/** ******************************************************************* *
 * Control structure for the amount of information that ML prints.      *
 * ******************************************************************** */

typedef struct ML_PrintControl_Struct ML_PrintControl;

struct ML_PrintControl_Struct {
   int            output_level;
};

extern ML_PrintControl ML_PrintLevel;

/* ******************************************************************** */
/* ******************************************************************** */
/*      User Interface Proto-types                                      */
/* ******************************************************************** */
/* ******************************************************************** */

#ifndef ML_CPP
#ifdef __cplusplus
extern "C" {
#endif
#endif

extern int ML_Create(ML **ml, int Nlevels);
extern int ML_build_ggb( ML *ml, void *data);
extern void ML_build_ggb_cheap(ML *ml, void *data);
extern void ML_build_ggb_fat(ML *ml, void *data);
extern int ML_Set_Symmetrize(ML *ml, int true_or_false);
extern int ML_Set_OutputLevel(ML *ml, int output_level);
extern int ML_Set_PrintLevel(int);
extern int ML_Get_PrintLevel(void);
extern int ML_Set_ResidualOutputFrequency(ML *ml, int output_freq);
extern int ML_Set_Tolerance(ML *ml, double tolerance);
extern int ML_Set_MaxIterations(ML *ml, int iterations);
extern int ML_Print_Timing(ML *ml);
extern int ML_Set_SpectralNormScheme_Calc(       ML *ml);
extern int ML_Set_SpectralNormScheme_Anorm(      ML *ml);
extern int ML_Set_SpectralNormScheme_Anasazi(    ML *ml);
extern int ML_Set_SpectralNormScheme_PowerMethod(ML *ml);
extern int ML_Set_SpectralNorm_Iterations(ML *ml, int its);


extern int ML_Destroy(ML **ml);
#ifdef GREG
extern int ML_Destroy2(ML **ml);
#endif
extern void ML_Solve_SmootherDestroy(void *data);

extern int ML_Init_Comm(ML *ml);
extern int ML_Set_Comm_MyRank(ML *ml, int myrank);
extern int ML_Set_Comm_Nprocs(ML *ml, int nprocs);
extern int ML_Set_Comm_Communicator(ML *ml, USR_COMM com);
extern int ML_Set_Comm_Send(ML *ml, int (*send)(void*,unsigned int,int,int,USR_COMM));
extern int ML_Set_Comm_Recv(ML *ml, int (*recv)(void*,unsigned int,int*,int*,USR_COMM,USR_REQ*));
extern int ML_Set_Comm_Wait(ML *ml, int (*wait)(void*,unsigned int,int*,int*,USR_COMM,USR_REQ*));

extern int ML_Set_Comm(ML *ml, ML_Comm *comm);

extern int ML_Init_Grid(ML *, int nl, void *grid);
extern int ML_Set_Grid_GridFunc(ML *, int nl, ML_GridFunc *);
extern int ML_Set_Grid_MaxVertPerElmnt(ML *, int, int nvert);
extern int ML_Set_Grid_GetDimension(ML *, int nl, int (*func)(void *));
extern int ML_Set_Grid_GetNVert(ML *, int nl, int (*func)(void *));
extern int ML_Set_Grid_GetNElmnt(ML *, int nl, int (*func)(void *));
extern int ML_Set_Grid_GetElmntNVert(ML *, int nl, int (*func)(void *, int));
extern int ML_Set_Grid_GetElmntVertList(ML *, int nl, int (*func)(void *, int, int *));
extern int ML_Set_Grid_GetVertGlobalNum(ML *, int nl, int (*func)(void *, int));
extern int ML_Set_Grid_GetElmntGlobalNum(ML *, int nl, ml_big_int (*func)(void *, int));
extern int ML_Set_Grid_GetVertCoordinate(ML *, int nl, int (*func)(void *, int, double *));
extern int ML_Set_Grid_ComputeBasisCoef(ML *, int nl, int (*func)(void*,int,double*,int,double*,int*));
extern int ML_Set_Grid_GetElmntVolume(ML *, int nl, int (*func)(void*,int,int*,double*));
extern int ML_Set_Grid_GetElmntMatrix(ML *, int nl, int (*func)(void*,int,double**));
extern int ML_Set_Grid_GetElmntNullSpace(ML *, int, int (*func)(void*,int,double*));


extern int ML_Gen_GridXsferUsingFEBasis(ML *, int L1, int L2, int stride);
extern int ML_Gen_MGHierarchyVanek(ML *, int start, int increment_or_decrement);

extern int ML_Set_Grid(ML *, int nl, void *grid, ML_GridFunc *);

extern int ML_Init_Amatrix(ML *,int level,int ilen,int olen,void *data);
extern int ML_Get_Amatrix(ML *ml, int level, ML_Operator **matrix);
extern int ML_Set_Amatrix_Matvec(ML*,int,
                          int (*func)(ML_Operator*,int,double*,int,double*));
extern int ML_Set_Amatrix_Diag(ML*,int,int, double *);
extern int ML_Set_Amatrix_Getrow(ML *ml, int level,
                    int (*getrow)(ML_Operator*,int,int*,int,int*,double*,int*),
   	            int (*comm  )(double *vec, void *data), int comm_vec_leng);
extern int ML_Set_Amatrix_GetrowNeighbors(ML*,int,int N_neigh,int *nlist);
extern int ML_Set_Amatrix_GetrowCommInfo(ML *, int level, int neighbor,
                     int N_rcv, int *rcv_list, int N_send, int *send_list);
extern int ML_Set_Amatrix_NormalizationFactors(ML*,int,int n,double *fact);
extern int ML_Set_Amatrix_NullSpace(ML *, int, int, int, double *);

extern void ML_setup_grid_xsfer_op(void *, ML_GridFunc *, void *,
                     ML_GridFunc *, void **xsfer, ML_Comm *);

extern int ML_Init_Restrictor(ML*,int L1,int L2,int,int,void *data);
extern int ML_Set_Restrictor_Matvec(ML*,int,
                    int (*func)(ML_Operator*,int,double*,int,double*));
extern int ML_Set_Restrictor_Getrow(ML *ml, int level,
                    int (*getrow)(ML_Operator*,int,int*,int,int*,double*,int*),
		    int (*comm  )(double *vec, void *data), int comm_vec_leng);
extern int ML_Set_Restrictor_GetrowNeighbors(ML *ml,int level,int N_neigh,
	             int *neigh_list);
extern int ML_Set_Restrictor_GetrowCommInfo(ML *ml,int level,int neighbor,
                     int N_rcv, int *rcv_list, int N_send, int *send_list);

extern int ML_Init_Prolongator(ML*,int L1,int L2,int,int,void *data);
extern int ML_Set_Prolongator_Matvec(ML *ml, int level,
                     int (*func) (ML_Operator *,int, double *, int, double *));
extern int ML_Set_Prolongator_Getrow(ML *ml, int level,
                    int (*getrow)(ML_Operator*,int,int*,int,int*,double*,int*),
		    int (*comm  )(double *vec, void *data), int comm_vec_leng);
extern int ML_Set_Prolongator_GetrowNeighbors(ML *ml,int level,int N_neigh,
	             int *neigh_list);
extern int ML_Set_Prolongator_GetrowCommInfo(ML *ml,int level,int neighbor,
                     int N_rcv, int *rcv_list, int N_send, int *send_list);

extern int ML_Gen_Blocks_Metis(ML *ml, int level, int *nblocks,int **block_list);

extern int ML_Gen_Smoother_Jacobi( ML *, int nl, int pre_or_post,
                     int ntimes, double omega );
extern int ML_Gen_Smoother_GaussSeidel(ML*,int nl,int pre_post,int ntimes,double);
extern int ML_Gen_Smoother_Hiptmair(ML*,int nl,int pre_post,int ntimes,
                                    ML_Operator**, ML_Operator**, ML_Operator*, ML_Operator**,
				    void *, void **,
				    void *, void **, int);
extern int ML_Gen_Smoother_Hiptmair2(ML*,int nl,int pre_post,int ntimes,
                                    ML_Operator**, ML_Operator**, ML_Operator*, ML_Operator**,ML_Operator*,
				    void *, void **,
				    void *, void **, int);
extern int ML_Gen_Smoother_BlockHiptmair(ML*,int nl,int pre_post,int ntimes,
                     ML_Operator**, ML_Operator**, ML_Operator*,
				    void *, void **,
				    void *, void **, int);
extern int ML_Gen_Smoother_SymGaussSeidel(ML*,int nl,int pre_post,int ntimes,
                                          double omega);
extern int ML_Gen_Smoother_EffSymGaussSeidel(ML*,int nl,int pre_post,int ntimes,
                                            double omega);
extern int ML_Gen_Smoother_SymGaussSeidelSequential(ML*,int nl,int pre_post,
                     int ntimes, double omega);
extern int ML_Gen_Smoother_MLS(ML*,int nl,int pre_post, double eig,
                     int degree);
extern int ML_Gen_Smoother_Cheby(ML*,int nl,int pre_post, double eig,
                     int degree);
extern int ML_Gen_Smoother_ERF_1StepKrylov(ML *ml, int nl, int pre_or_post);

extern int ML_Gen_Smoother_SubdomainOverlap(ML *ml, int level, int overlap);

extern int ML_Gimmie_Eigenvalues(ML_Operator *Amat, int scale_by_diag,
			 int matrix_is_nonsymmetric, int symmetrize_matrix);
extern int ML_Gen_Smoother_BlockDiagScaledCheby(ML *ml, int nl,
					int pre_or_post,
					double eig_ratio, int deg,
					int nBlocks, int *blockIndices);
extern int ML_Gen_BlockScaledMatrix_with_Eigenvalues(ML_Operator *Amat,
					      int nBlocks,
					      int *blockIndices,
					      ML_Operator **blockMat,
					      struct MLSthing *widget);

extern int ML_Gen_Smoother_OrderedSymGaussSeidel(ML *ml , int nl, int pre_or_post,
                     int ntimes, double omega);

extern int ML_Gen_Smoother_ParaSails(ML *ml, int nl, int pre_or_post, int ntimes,
   int sym, double thresh, int num_levels, double filter, int , int);

extern int ML_Gen_Smoother_SymBlockGaussSeidel(ML*,int nl,int pre_post,
		     int ntimes, double omega, int blocksize);
extern int ML_Gen_Smoother_BlockGaussSeidel(ML*,int nl,int pre_post,int ntimes,
		     double omega, int blocksize);
extern void BGS_Clean(void *data);
extern int ML_Gen_Smoother_VBlockJacobi(ML*,int nl,int pre_post, int ntimes,
                     double omeg, int Nblocks, int *blockList);
extern int ML_Gen_Smoother_VBlockSymGaussSeidel(ML*,int nl,int pre_post,
                     int ntimes, double omega, int Nblocks, int *blockList);
extern int ML_Gen_Smoother_LineSmoother( ML *ml , int nl, int pre_or_post,
       int ntimes, double omega, int nBlocks, int *blockIndices, int *blockOffset,
       int  (*fun)(ML_Smoother *, int, double *, int, double *),  ML_GS_SWEEP_TYPE GS_type);
extern int ML_Gen_Smoother_VBlockSymGaussSeidelSequential(ML*,int nl, int,
                     int ntimes,double omega,int Nblocks,int *blockList);
extern int ML_Gen_Smoother_VBlockKrylovJacobi(ML*,int nl,int pre_post, int ntimes,
                     double omeg, int Nblocks, int *blockList);
extern int ML_Gen_Smoother_OverlappedDDILUT(ML*,int nl,int pre_post);
extern int ML_Gen_Smoother_VBlockAdditiveSchwarz(ML *,int nl,int pre_or_post,
                     int ntimes, int length, int *blkinfo);
extern int ML_Gen_Smoother_VBlockMultiplicativeSchwarz(ML *,int nl,
                     int pre_or_post, int ntimes, int length, int *blkinfo);
#ifdef HAVE_ML_PETSC
extern int ML_Gen_Smoother_Petsc(ML *ml, int level, int pre_or_post, int ntimes, ML_PetscKSP petscKSP);
#endif

extern int ML_Gen_Smoother_GSextra( ML *ml , int nl, int pre_or_post,
		     int ntimes, double omega, int Nextra, int extra[]);
extern int ML_Set_Smoother(ML *, int nl , int pre_post, void *obj,
                     int (*func)(ML_Smoother *, int, double *, int, double *),
                     char *);

extern int ML_Gen_CoarseSolverSuperLU(ML *ml_handle, int level);
extern int ML_Gen_CoarseSolverAggregation(ML *ml_handle, int level,
                                          ML_Aggregate *ag);

extern int ML_Gen_AmatrixRAP(ML *ml, int to_level, int from_level);
extern int ML_Gen_Amatrix_Global(ML_Matrix_DCSR *inmat,
     ML_Matrix_DCSR *outmat, ML_Comm *comm, int *offset);

extern int ML_Set_EqnToGridMapFunc(ML *, int,int fleng,int tleng,
                                   int (*func)(void*,double*,double*));
extern int ML_Set_GridToEqnMapFunc(ML *, int,int fleng,int tleng,
                                   int (*func)(void*,double*,double*));
extern int ML_Set_BoundaryTypes(ML*,int level,int type,int n,int *data);

extern int ML_Setup(ML *ml, int method, int finest_level, int, void *);

extern int ML_Gen_Solver(ML *ml, int method, int finest_level, int);
extern int ML_Iterate(ML *ml, double *sol, double *rhs);
extern int ML_Solve(ML *ml, int inlen, double *sol, int outlen, double *rhs);

int ML_Solve_MGV( ML *ml , double *din, double *dout);




#ifdef WKC
/* WKC -- new prototype for V-cycle solve */
int ML_Solve_MGV( ML *ml , const Epetra_MultiVector &in ,
                         Epetra_MultiVector &out );
#endif

extern int ML_Solve_MGFull( ML *ml , double *din, double *dout);
extern int ML_Solve_Smoother(void *data, int isize, double *x, int osize,
			     double *rhs);

extern double ML_Cycle_MG(ML_1Level *curr, double *sol, double *rhs,
                     int approx_all_zeros, ML_Comm *comm, int, ML *ml);

extern int ML_Cycle_GGB(ML *ml_ggb, double *sol, double *rhs);


#ifdef WKC
/* WKC -- new prototype for V-cycle solve */
extern double ML_Cycle_MG(ML_1Level *curr, Epetra_MultiVector &ep_sol,
                     Epetra_MultiVector &ep_rhs,
                     int approx_all_zeros, ML_Comm *comm, int, ML *ml);
#endif

extern double ML_Cycle_MGFull(ML_1Level *curr, double *sol, double *rhs,
                     int approx_all_zeros, ML_Comm *comm, int, ML *ml);
extern int ML_Solve_AMGV( ML *ml , double *din, double *dout);
extern double ML_Cycle_AMGV(ML_1Level *curr, double *sol, double *rhs,
                     int approx_all_zeros, ML_Comm *comm);
extern int ML_Solve_ProjectedAMGV( ML *ml , double *din, double *dout);
extern int ML_Gen_SmootherGSextra( ML *ml , int nl, int pre_or_post,
				   int ntimes, double omega, int Nextra,
				   int extra[]);
extern int ML_MLS_Setup_Coef(void *sm, int deg, int symmetrize);
extern int ML_Seg_Solve( ML *ml , double *din, double *dout);
extern int ML_Clean_CSolveSuperLU( void *vsolver, ML_CSolveFunc *func);
extern int ML_Solver_SetScheme(ML *ml, int scheme);
extern int ML_Smoother_Reinit(ML *ml);

extern void ML_Repartition_Set_LargestMinMaxRatio(ML*, double);
extern double  ML_Repartition_Get_LargestMinMaxRatio(ML* ml);
extern void ML_Repartition_Set_MinPerProc(ML*, int);
extern void ML_Repartition_Set_PutOnSingleProc(ML*, int);
extern int  ML_Repartition_Get_MinPerProc(ML* ml);
extern void ML_Repartition_Set_Partitioner(ML*, ML_Partitioner);
extern ML_Partitioner ML_Repartition_Get_Partitioner(ML* ml);
extern void ML_Repartition_Activate(ML* ml);
extern void ML_Repartition_Deactivate(ML* ml);
extern int ML_Repartition_Status(ML* ml);
extern void ML_Repartition_Set_StartLevel(ML*, int);
extern int  ML_Repartition_Get_StartLevel(ML* ml);
extern int ML_Use_LowMemory();
extern void ML_Enable_LowMemory();
extern void ML_Disable_LowMemory();
extern void ML_Set_LevelID(ML *ml, int incr_or_decr);
extern int ML_Get_LevelID(ML *ml, int logical_level);
extern void ML_Set_Label( ML *ml, char *label);
extern int ML_Get_Label( ML *ml, char *label);

#ifndef ML_CPP
#ifdef __cplusplus
}
#endif
#endif



#endif