/usr/include/trilinos/ML_Linker.hpp is in libtrilinos-muelu-dev 12.4.2-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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//
// ***********************************************************************
//
// MueLu: A package for multigrid based preconditioning
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
// Jonathan Hu (jhu@sandia.gov)
// Andrey Prokopenko (aprokop@sandia.gov)
// Ray Tuminaro (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
// Unmaintained code snippet to use Muelu's aggregation algorithms in ML
#include "ml_aggregate.h"
#include "ml_epetra_utils.h"
extern MueLu_Graph *MueLu_BuildGraph(ML_Matrix *Amatrix, char *name);
extern int MueLu_DestroyGraph(MueLu_Graph *graph);
/**********************************************************************************/
/* Function to execute new MueLu aggregation via old ML */
/* This function should go away soon as we should start executing new MueLu */
/* aggregation inside MueLu.
/**********************************************************************************/
int ML_Aggregate_CoarsenUncoupled(ML_Aggregate *mlAggregates,
ML_Matrix *Amatrix, ML_Matrix **Pmatrix, ML_Comm *comm)
{
MueLu_Graph *graph;
graph = MueLu_BuildGraph(Amatrix,"ML_Uncoupled");
if (graph->eGraph->Comm().MyPID() == 0 && mlAggregates->printFlag < MueLu_PrintLevel())
printf("ML_Aggregate_CoarsenUncoupled : \n");
MueLu_AggOptions aggregateOptions;
aggregateOptions.printFlag = mlAggregates->print_flag;
aggregateOptions.minNodesPerAggregate = mlAggregates->min_nodes_per_aggregate;
aggregateOptions.maxNeighAlreadySelected = mlAggregates->max_neigh_already_selected;
aggregateOptions.ordering = mlAggregates->ordering;
aggregateOptions.phase3AggCreation = mlAggregates->phase3_agg_creation;
Aggregates *aggregates = NULL;
aggregates = MueLu_Aggregate_CoarsenUncoupled(&aggregateOptions,graph);
MueLu_AggregateLeftOvers(&aggregateOptions, aggregates, "UC_CleanUp", graph);
//#ifdef out
Epetra_IntVector Final( aggregates->vertex2AggId->Map() );
for (int i = 0; i < aggregates->vertex2AggId->Map().NumMyElements(); i++)
Final[i] = (*(aggregates->vertex2AggId))[i] + (*(aggregates->procWinner))[i]*1000;
printf("finals\n");
cout << Final << endl; sleep(2);
//#endif
MueLu_AggregateDestroy(aggregates);
MueLu_DestroyGraph(graph);
return 0;
}
/**********************************************************************************/
/* Function to take an ML_Matrix (which actually wraps an Epetra_CrsMatrix) and */
/* extract out the Epetra_CrsGraph. My guess is that this should be changed soon */
/* so that the first argument is some MueLu API Matrix. */
/**********************************************************************************/
MueLu_Graph *MueLu_BuildGraph(ML_Matrix *Amatrix, char *name)
{
MueLu_Graph *graph;
double *dtmp = NULL;
Epetra_CrsMatrix *A;
graph = (MueLu_Graph *) malloc(sizeof(MueLu_Graph));
graph->eGraph = NULL;
graph->name = NULL;
graph->name = (char *) malloc(sizeof(char)*80); strcpy(Graph->name,name);
graph->nVertices = Amatrix->invec_leng;
if ( Amatrix->getrow->nrows == 0) {
graph->vertexNeighbors = NULL;
graph->vertexNeighborsPtr = NULL;
graph->nEdges = 0;
}
else {
Epetra_ML_GetCrsDataptrs(Amatrix, &dtmp, &(graph->vertexNeighbors),&(graph->vertexNeighborsPtr));
if ( graph->vertexNeighborsPtr == NULL) {
printf("MueLu_BuildGraph: Only functions for an Epetra_CrsMatrix.\n");
exit(1);
}
graph->nEdges = (graph->vertexNeighborsPtr)[Amatrix->getrow->Nrows];
Epetra_ML_GetCrsMatrix( Amatrix, (void **) &A );
graph->eGraph = &(A->graph());
}
if (graph->eGraph == NULL) graph->nGhost = 0;
else {
graph->nGhost = A->RowMatrixColMap().NumMyElements() - A->MatrixDomainMap().NumMyElements();
if (graph->nGhost < 0) graph->nGhost = 0;
}
return graph;
}
int MueLu_DestroyGraph(MueLu_Graph *graph)
{
if ( graph != NULL) {
if (graph->name != NULL) free(graph->name);
free(graph);
}
return 0;
}
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