/usr/include/trilinos/MueLu_BlockedGaussSeidelSmoother_def.hpp is in libtrilinos-muelu-dev 12.4.2-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 | // @HEADER
//
// ***********************************************************************
//
// MueLu: A package for multigrid based preconditioning
// Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
// Jonathan Hu (jhu@sandia.gov)
// Andrey Prokopenko (aprokop@sandia.gov)
// Ray Tuminaro (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
/*
* MueLu_BlockedGaussSeidelSmoother_def.hpp
*
* Created on: 30.01.2012
* Author: tobias
*/
#ifndef MUELU_BLOCKEDGAUSSSEIDELSMOOTHER_DEF_HPP_
#define MUELU_BLOCKEDGAUSSSEIDELSMOOTHER_DEF_HPP_
#include "Teuchos_ArrayViewDecl.hpp"
#include "Teuchos_ScalarTraits.hpp"
#include "MueLu_ConfigDefs.hpp"
#include <Xpetra_Matrix.hpp>
#include <Xpetra_BlockedCrsMatrix.hpp>
#include <Xpetra_MultiVectorFactory.hpp>
#include "MueLu_BlockedGaussSeidelSmoother_decl.hpp"
#include "MueLu_Level.hpp"
#include "MueLu_Utilities.hpp"
#include "MueLu_Monitor.hpp"
#include "MueLu_HierarchyHelpers.hpp"
#include "MueLu_SmootherBase.hpp"
namespace MueLu {
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::BlockedGaussSeidelSmoother()
: type_("blocked GaussSeidel"), A_(Teuchos::null)
{
FactManager_.reserve(10);
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::~BlockedGaussSeidelSmoother() {}
template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
RCP<const ParameterList> BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
RCP<ParameterList> validParamList = rcp(new ParameterList());
validParamList->set< RCP<const FactoryBase> >("A", Teuchos::null, "Generating factory of the matrix A");
validParamList->set< Scalar > ("Damping factor", 1.0, "Damping/Scaling factor in BGS");
validParamList->set< LocalOrdinal > ("Sweeps", 1, "Number of BGS sweeps (default = 1)");
return validParamList;
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
void BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::AddFactoryManager(RCP<const FactoryManagerBase> FactManager, int pos) {
TEUCHOS_TEST_FOR_EXCEPTION(pos < 0, Exceptions::RuntimeError, "MueLu::BlockedGaussSeidelSmoother::AddFactoryManager: parameter \'pos\' must not be negative! error.");
size_t myPos = Teuchos::as<size_t>(pos);
if (myPos < FactManager_.size()) {
// replace existing entris in FactManager_ vector
FactManager_.at(myPos) = FactManager;
} else if( myPos == FactManager_.size()) {
// add new Factory manager in the end of the vector
FactManager_.push_back(FactManager);
} else { // if(myPos > FactManager_.size())
RCP<Teuchos::FancyOStream> out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
*out << "Warning: cannot add new FactoryManager at proper position " << pos << ". The FactoryManager is just appended to the end. Check this!" << std::endl;
// add new Factory manager in the end of the vector
FactManager_.push_back(FactManager);
}
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
void BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level ¤tLevel) const {
//this->Input(currentLevel, "A");
// TODO: check me: why is this->Input not freeing properly A in release mode?
currentLevel.DeclareInput("A",this->GetFactory("A").get());
// loop over all factory managers for the subblocks of blocked operator A
std::vector<Teuchos::RCP<const FactoryManagerBase> >::const_iterator it;
for(it = FactManager_.begin(); it!=FactManager_.end(); ++it) {
SetFactoryManager currentSFM (rcpFromRef(currentLevel), *it);
// request "Smoother" for current subblock row.
currentLevel.DeclareInput("PreSmoother",(*it)->GetFactory("Smoother").get());
}
//RCP<Teuchos::FancyOStream> out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
void BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Setup(Level ¤tLevel) {
//typedef Xpetra::BlockedCrsMatrix<Scalar, LocalOrdinal, GlobalOrdinal, Node> BlockedCrsOMatrix;
RCP<Teuchos::FancyOStream> out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
FactoryMonitor m(*this, "Setup blocked Gauss-Seidel Smoother", currentLevel);
if (SmootherPrototype::IsSetup() == true) this->GetOStream(Warnings0) << "MueLu::BlockedGaussSeidelSmoother::Setup(): Setup() has already been called";
// extract blocked operator A from current level
A_ = Factory::Get< RCP<Matrix> >(currentLevel, "A"); // A needed for extracting map extractors
RCP<BlockedCrsMatrix> bA = Teuchos::rcp_dynamic_cast<BlockedCrsMatrix>(A_);
TEUCHOS_TEST_FOR_EXCEPTION(bA==Teuchos::null, Exceptions::BadCast, "MueLu::BlockedPFactory::Build: input matrix A is not of type BlockedCrsMatrix! error.");
// plausibility check
TEUCHOS_TEST_FOR_EXCEPTION(bA->Rows() != FactManager_.size(), Exceptions::RuntimeError, "MueLu::BlockedPFactory::Build: number of block rows of A does not match number of SubFactoryManagers. error.");
TEUCHOS_TEST_FOR_EXCEPTION(bA->Cols() != FactManager_.size(), Exceptions::RuntimeError, "MueLu::BlockedPFactory::Build: number of block cols of A does not match number of SubFactoryManagers. error.");
// store map extractors
rangeMapExtractor_ = bA->getRangeMapExtractor();
domainMapExtractor_ = bA->getDomainMapExtractor();
Teuchos::RCP<Teuchos::FancyOStream> fos = Teuchos::getFancyOStream(Teuchos::rcpFromRef(std::cout));
// loop over all factory managers for the subblocks of blocked operator A
size_t bgsOrderingIndex = 0;
//std::map<size_t,size_t> bgsOrderingIndex2blockRowIndex;
std::vector<Teuchos::RCP<const FactoryManagerBase> >::const_iterator it;
for(it = FactManager_.begin(); it!=FactManager_.end(); ++it) {
SetFactoryManager currentSFM (rcpFromRef(currentLevel), *it);
// extract Smoother for current block row (BGS ordering)
RCP<const SmootherBase> Smoo = currentLevel.Get< RCP<SmootherBase> >("PreSmoother",(*it)->GetFactory("Smoother").get());
Inverse_.push_back(Smoo);
// extract i-th diagonal block Aii -> determine block
/*currentLevel.print(*out, Teuchos::VERB_EXTREME);
std::cout << "BGS: need A from factory " << (*it)->GetFactory("A").get() << std::endl;
RCP<Matrix> Aii = currentLevel.Get< RCP<Matrix> >("A",(*it)->GetFactory("A").get());
currentLevel.print(*out, Teuchos::VERB_EXTREME);
for(size_t i = 0; i<rangeMapExtractor_->NumMaps(); i++) {
if(rangeMapExtractor_->getMap(i)->isSameAs(*(Aii->getRangeMap()))) {
// map found: i is the true block row index
// fill std::map with information bgsOrderingIndex -> i
bgsOrderingIndex2blockRowIndex_[bgsOrderingIndex] = i;
break;
}
}*/
bgsOrderingIndex2blockRowIndex_[bgsOrderingIndex] = bgsOrderingIndex; // TODO fix me
bgsOrderingIndex++;
}
SmootherPrototype::IsSetup(true);
}
// This function is equivalent to the std::map 'at' method introduced in C++11.
// TODO: move to Utils
template <class StdMapType>
const typename StdMapType::mapped_type & at(const StdMapType& map, const typename StdMapType::key_type& x) {
typename StdMapType::const_iterator it = map.find(x);
TEUCHOS_TEST_FOR_EXCEPTION(it == map.end(), std::out_of_range, "MueLu::at(): element does not exist in the map");
return it->second;
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
void BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Apply(MultiVector &X, const MultiVector& B, bool InitialGuessIsZero) const
{
TEUCHOS_TEST_FOR_EXCEPTION(SmootherPrototype::IsSetup() == false, Exceptions::RuntimeError, "MueLu::BlockedGaussSeidelSmoother::Apply(): Setup() has not been called");
RCP<Xpetra::MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node> > residual = MultiVectorFactory::Build(B.getMap(), B.getNumVectors());
RCP<Xpetra::MultiVector<Scalar, LocalOrdinal, GlobalOrdinal, Node> > tempres = MultiVectorFactory::Build(B.getMap(), B.getNumVectors());
RCP<MultiVector> rcpX = Teuchos::rcpFromRef(X);
//Teuchos::RCP<Teuchos::FancyOStream> fos = Teuchos::getFancyOStream(Teuchos::rcpFromRef(std::cout));
// extract parameters from internal parameter list
const ParameterList & pL = Factory::GetParameterList();
LocalOrdinal nSweeps = pL.get<LocalOrdinal>("Sweeps");
Scalar omega = pL.get<Scalar>("Damping factor");
// outer Richardson loop
for (LocalOrdinal run = 0; run < nSweeps; ++run) {
// one BGS sweep
// loop over all block rows
for(size_t i = 0; i<Inverse_.size(); i++) {
// calculate block residual r = B-A*X
// note: A_ is the full blocked operator
residual->update(1.0,B,0.0); // r = B
A_->apply(X, *residual, Teuchos::NO_TRANS, -1.0, 1.0);
// extract corresponding subvectors from X and residual
size_t blockRowIndex = at(bgsOrderingIndex2blockRowIndex_, i); // == bgsOrderingIndex2blockRowIndex_.at(i) (only available since C++11)
Teuchos::RCP<MultiVector> Xi = domainMapExtractor_->ExtractVector(rcpX, blockRowIndex);
Teuchos::RCP<MultiVector> ri = rangeMapExtractor_->ExtractVector(residual, blockRowIndex);
Teuchos::RCP<MultiVector> tXi = domainMapExtractor_->getVector(blockRowIndex, X.getNumVectors());
// apply solver/smoother
Inverse_.at(i)->Apply(*tXi, *ri, false);
// update vector
Xi->update(omega,*tXi,1.0); // X_{i+1} = X_i + omega \Delta X_i
// update corresponding part of rhs and lhs
domainMapExtractor_->InsertVector(Xi, blockRowIndex, rcpX); // TODO wrong! fix me
}
}
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
RCP<MueLu::SmootherPrototype<Scalar, LocalOrdinal, GlobalOrdinal, Node> > BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Copy() const {
return rcp( new BlockedGaussSeidelSmoother(*this) );
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
std::string BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::description() const {
std::ostringstream out;
out << SmootherPrototype::description();
out << "{type = " << type_ << "}";
return out.str();
}
template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
void BlockedGaussSeidelSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::print(Teuchos::FancyOStream &out, const VerbLevel verbLevel) const {
MUELU_DESCRIBE;
// extract parameters from internal parameter list
const ParameterList & pL = Factory::GetParameterList();
LocalOrdinal nSweeps = pL.get<LocalOrdinal>("Sweeps");
Scalar omega = pL.get<Scalar>("Damping factor");
if (verbLevel & Parameters0) {
out0 << "Prec. type: " << type_ << " Sweeps: " << nSweeps << " damping: " << omega << std::endl;
}
if (verbLevel & Debug) {
std::map<size_t,size_t>::const_iterator itOrdering;
for(itOrdering = bgsOrderingIndex2blockRowIndex_.begin(); itOrdering!=bgsOrderingIndex2blockRowIndex_.end(); itOrdering++) {
std::cout << "block GaussSeidel ordering index: " << (*itOrdering).first << " -> block row in blocked A: " << (*itOrdering).second << std::endl;
}
}
if (verbLevel & Debug) {
out0 << "IsSetup: " << Teuchos::toString(SmootherPrototype::IsSetup()) << std::endl;
}
}
} // namespace MueLu
#endif /* MUELU_BLOCKEDGAUSSSEIDELSMOOTHER_DEF_HPP_ */
|