This file is indexed.

/usr/include/trilinos/MueLu_Graph_decl.hpp is in libtrilinos-muelu-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_GRAPH_DECL_HPP
#define MUELU_GRAPH_DECL_HPP

#include <Xpetra_ConfigDefs.hpp>   // global_size_t
#include <Xpetra_CrsGraph.hpp>     // inline functions requires class declaration
#include <Xpetra_Map_fwd.hpp>

#include "MueLu_ConfigDefs.hpp"

#include "MueLu_Graph_fwd.hpp"
#include "MueLu_GraphBase.hpp"

namespace MueLu {

/*!
   @class Graph
   @brief MueLu representation of a compressed row storage graph.

   This class holds an underlying Xpetra_CrsGraph.
   This class can be considered a facade, as MueLu needs only limited functionality for aggregation.
*/
  template <class LocalOrdinal = Xpetra::CrsGraph<>::local_ordinal_type,
            class GlobalOrdinal = typename Xpetra::CrsGraph<LocalOrdinal>::global_ordinal_type,
            class Node = typename Xpetra::CrsGraph<LocalOrdinal, GlobalOrdinal>::node_type>
  class Graph
    : public MueLu::GraphBase<LocalOrdinal,GlobalOrdinal,Node> { //FIXME  shortnames isn't working
#undef MUELU_GRAPH_SHORT
#include "MueLu_UseShortNamesOrdinal.hpp"

  public:

    //! @name Constructors/Destructors.
    //@{
    Graph(const RCP<const CrsGraph> & graph, const std::string & objectLabel="") : graph_(graph) {
      minLocalIndex_ = graph_->getDomainMap()->getMinLocalIndex();
      maxLocalIndex_ = graph_->getDomainMap()->getMaxLocalIndex();
    }

    virtual ~Graph() {}
    //@}

    size_t GetNodeNumVertices() const                                        { return graph_->getNodeNumRows(); }
    size_t GetNodeNumEdges()    const                                        { return graph_->getNodeNumEntries(); }

    Xpetra::global_size_t GetGlobalNumEdges() const                          { return graph_->getGlobalNumEntries(); }

    const RCP<const Teuchos::Comm<int> > GetComm() const                     { return graph_->getComm(); }
    const RCP<const Map> GetDomainMap() const                                { return graph_->getDomainMap(); }
    //! Returns overlapping import map (nodes).
    const RCP<const Map> GetImportMap() const                                { return graph_->getColMap();    }

    //! Set map with local ids of boundary nodes.
    void SetBoundaryNodeMap(const ArrayRCP<const bool>& localDirichletNodes) { localDirichletNodes_ = localDirichletNodes; }

    //! Returns map with local ids of boundary nodes.
    const ArrayRCP<const bool> GetBoundaryNodeMap() const                    { return localDirichletNodes_; }

    //! Returns the maximum number of entries across all rows/columns on this node
    size_t getNodeMaxNumRowEntries () const                                  { return graph_->getNodeMaxNumRowEntries(); }

    //! Return the list of vertices adjacent to the vertex 'v'.
    ArrayView<const LO> getNeighborVertices(LO i) const {
      ArrayView<const LO> rowView;
      graph_->getLocalRowView(i, rowView);
      return rowView;
    }

    //! Return true if vertex with local id 'v' is on current process.
    bool isLocalNeighborVertex(LO i) const                                   { return i >= minLocalIndex_ && i <= maxLocalIndex_; }

#ifdef MUELU_UNUSED
    size_t GetNodeNumGhost() const;
#endif

    /// Return a simple one-line description of the Graph.
    std::string description() const                                          { return "MueLu.description()"; }

    //! Print the Graph with some verbosity level to an FancyOStream object.
    //using MueLu::Describable::describe; // overloading, not hiding
    //void describe(Teuchos::FancyOStream &out, const VerbLevel verbLevel = Default) const;;
    void print(Teuchos::FancyOStream &out, const VerbLevel verbLevel = Default) const;

  private:

    RCP<const CrsGraph> graph_;

    //! Vector of Dirichlet boundary node IDs on current process.
    ArrayRCP<const bool> localDirichletNodes_;

    // local index boundaries (cached from domain map)
    LO minLocalIndex_, maxLocalIndex_;
  };

} // namespace MueLu

#define MUELU_GRAPH_SHORT
#endif // MUELU_GRAPH_DECL_HPP