This file is indexed.

/usr/include/trilinos/MueLu_LWGraph_decl.hpp is in libtrilinos-muelu-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_LWGRAPH_DECL_HPP
#define MUELU_LWGRAPH_DECL_HPP

#include <Xpetra_ConfigDefs.hpp>   // global_size_t
#include <Xpetra_CrsGraph.hpp>     // inline functions requires class declaration
#include <Xpetra_Map_fwd.hpp>

#include "MueLu_ConfigDefs.hpp"

#include "MueLu_LWGraph_fwd.hpp"
#include "MueLu_GraphBase.hpp"
#include "MueLu_Exceptions.hpp"

namespace MueLu {

/*!
   @class LWGraph
   @brief Lightweight MueLu representation of a compressed row storage graph.

   This class is lightweight in the sense that it holds to local graph information.  These were built without using
   fillComplete.
   TODO handle systems
*/
  template <class LocalOrdinal  = int, class GlobalOrdinal = LocalOrdinal, class Node = KokkosClassic::DefaultNode::DefaultNodeType>
  class LWGraph : public MueLu::GraphBase<LocalOrdinal,GlobalOrdinal,Node> {
#undef MUELU_LWGRAPH_SHORT
#include "MueLu_UseShortNamesOrdinal.hpp"

  public:

    //! @name Constructors/Destructors.
    //@{
    LWGraph(const ArrayRCP<const LO>& rowPtrs, const ArrayRCP<const LO>& colPtrs,
            const RCP<const Map>& domainMap, const RCP<const Map>& rangeMap, const std::string& objectLabel = "")
            : rows_(rowPtrs), columns_(colPtrs), domainMap_(domainMap), importMap_(rangeMap), domainMapRef_(*domainMap), objectLabel_(objectLabel)
    {
      minLocalIndex_ = domainMapRef_.getMinLocalIndex();
      maxLocalIndex_ = domainMapRef_.getMaxLocalIndex();

      maxNumRowEntries_ = 0;

      LO nRows = as<LO>(rowPtrs.size()-1);
      for (LO i = 0; i < nRows; i++)
        maxNumRowEntries_ = std::max(maxNumRowEntries_, as<size_t>(rowPtrs[i+1] - rowPtrs[i]));
    }

    virtual ~LWGraph() {}
    //@}

    size_t GetNodeNumVertices() const { return rows_.size()-1; }
    size_t GetNodeNumEdges()    const { return rows_[rows_.size()-1]; }

    // TODO: do we really need this function
    // It is being called from CoupledAggregation, but do we need it there?
    Xpetra::global_size_t GetGlobalNumEdges() const {
      Xpetra::global_size_t in = GetNodeNumEdges(), out;
      Teuchos::reduceAll(*domainMap_->getComm(), Teuchos::REDUCE_SUM, in, Teuchos::outArg(out));
      return out;
    }

    const RCP<const Teuchos::Comm<int> > GetComm()      const    { return domainMap_->getComm(); }
    const RCP<const Map>                 GetDomainMap() const    { return domainMap_; }
    //! Returns overlapping import map (nodes).
    const RCP<const Map>                 GetImportMap() const    { return importMap_; }

    void SetBoundaryNodeMap(RCP<const Map> const &map)           { throw Exceptions::NotImplemented("LWGraph: Boundary node map not implemented."); }

    //! Return the list of vertices adjacent to the vertex 'v'.
    Teuchos::ArrayView<const LO> getNeighborVertices(LO i) const { return columns_.view(rows_[i], rows_[i+1]-rows_[i]); }

    //! Return true if vertex with local id 'v' is on current process.
    bool isLocalNeighborVertex(LO i) const                       { return i >= minLocalIndex_ && i <= maxLocalIndex_; }

    //! Set boolean array indicating which rows correspond to Dirichlet boundaries.
    void SetBoundaryNodeMap(const ArrayRCP<const bool>& bndry)   { dirichletBoundaries_ = bndry; }

    //! Returns the maximum number of entries across all rows/columns on this node
    size_t getNodeMaxNumRowEntries () const                      { return maxNumRowEntries_; }

    //! Returns map with global ids of boundary nodes.
    const ArrayRCP<const bool> GetBoundaryNodeMap() const        { return dirichletBoundaries_; }


    /// Return a simple one-line description of the Graph.
    std::string description() const                              { return "MueLu.description()"; } //FIXME use object's label


    //! Print the Graph with some verbosity level to an FancyOStream object.
    //using MueLu::Describable::describe; // overloading, not hiding
    //void describe(Teuchos::FancyOStream &out, const VerbLevel verbLevel = Default) const;;
    void print(Teuchos::FancyOStream &out, const VerbLevel verbLevel = Default) const;

  private:

    //! Indices into columns_ array.  Part of local graph information.
    const ArrayRCP<const LO> rows_;
    //! Columns corresponding to connections.  Part of local graph information.
    const ArrayRCP<const LO> columns_;
    //! Graph maps
    const RCP<const Map> domainMap_, importMap_;
    const Map& domainMapRef_;
    //! Name of this graph.
    const std::string & objectLabel_;
    //! Boolean array marking Dirichlet rows.
    ArrayRCP<const bool> dirichletBoundaries_;

    // local index boundaries (cached from domain map)
    LO     minLocalIndex_, maxLocalIndex_;
    size_t maxNumRowEntries_;
  };

} // namespace MueLu

#define MUELU_LWGRAPH_SHORT
#endif // MUELU_LWGRAPH_DECL_HPP