This file is indexed.

/usr/include/trilinos/MueLu_MergedSmoother_decl.hpp is in libtrilinos-muelu-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef MUELU_MERGEDSMOOTHER_DECL_HPP
#define MUELU_MERGEDSMOOTHER_DECL_HPP

#include "MueLu_ConfigDefs.hpp"
#include "MueLu_MergedSmoother_fwd.hpp"
#include "MueLu_SmootherPrototype.hpp"

/*! @class MergedSmoother
    @ingroup MueLuSmootherClasses 
*/

namespace MueLu {

  class Level;

  template <class Scalar = SmootherPrototype<>::scalar_type,
            class LocalOrdinal = typename SmootherPrototype<Scalar>::local_ordinal_type,
            class GlobalOrdinal = typename SmootherPrototype<Scalar, LocalOrdinal>::global_ordinal_type,
            class Node = typename SmootherPrototype<Scalar, LocalOrdinal, GlobalOrdinal>::node_type>
  class MergedSmoother : public SmootherPrototype<Scalar,LocalOrdinal,GlobalOrdinal,Node> {
#undef MUELU_MERGEDSMOOTHER_SHORT
#include "MueLu_UseShortNames.hpp"

  public:
    //! @name Constructors / destructors
    //@{

    //! Constructor
    MergedSmoother(ArrayRCP<RCP<SmootherPrototype> >& smootherList, bool verbose = false);

    //! Copy constructor (performs a deep copy of input object)
    MergedSmoother(const MergedSmoother& src);

    //! Copy method (performs a deep copy of input object)
    RCP<SmootherPrototype> Copy() const;

    //! Destructor
    virtual ~MergedSmoother() { }
    //@}

    //! @name Set/Get methods
    //@{

    void StandardOrder() { reverseOrder_ = false; }
    void ReverseOrder()  { reverseOrder_ = true;  }

    // TODO: GetOrder() is a better name (+ enum to define order)
    bool GetReverseOrder() const { return reverseOrder_; }

    //  TODO  const ArrayRCP<const RCP<const SmootherPrototype> > & GetSmootherList() const;
    const ArrayRCP<const RCP<SmootherPrototype> > GetSmootherList() const { return smootherList_; }

    //@}

    void DeclareInput(Level &currentLevel) const;

    //! @name Setup and Apply methods.
    //@{

    /*! @brief Set up. */
    void Setup(Level& level);

    /*! @brief Apply

    Solves the linear system <tt>AX=B</tt> using the smoothers of the list.

    @param X initial guess
    @param B right-hand side
    @param InitialGuessIsZero
    */
    void Apply(MultiVector& X, const MultiVector& B, bool InitialGuessIsZero = false) const;

    //@}

    //! Custom SetFactory
    void SetFactory(const std::string& varName, const RCP<const FactoryBase>& factory);

    void print(Teuchos::FancyOStream& out, const VerbLevel verbLevel = Default) const;

    void CopyParameters(RCP<SmootherPrototype> src); // TODO: wrong prototype. We do not need an RCP here.

    ArrayRCP<RCP<SmootherPrototype> > SmootherListDeepCopy(const ArrayRCP<const RCP<SmootherPrototype> >& srcSmootherList);

    //@}

  private:
    // List of smoothers. It is an ArrayRCP of RCP because:
    //  1) I need a vector of pointers (to avoid slicing problems)
    //  2) I can use an std::vector insead of an ArrayRCP but then the constructor will do a copy of user input
    ArrayRCP<RCP<SmootherPrototype> > smootherList_;

    //
    bool reverseOrder_;

    // tmp, for debug
    bool verbose_;

  }; //class MergedSmoother

} //namespace MueLu

#define MUELU_MERGEDSMOOTHER_SHORT
#endif // MUELU_MERGEDSMOOTHER_DECL_HPP