This file is indexed.

/usr/include/trilinos/MueLu_UzawaSmoother_def.hpp is in libtrilinos-muelu-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
// @HEADER
//
// ***********************************************************************
//
//        MueLu: A package for multigrid based preconditioning
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
/*
 * MueLu_UzawaSmoother_def.hpp
 *
 *  Created on: 13 May 2014
 *      Author: wiesner
 */

#ifndef MUELU_UZAWASMOOTHER_DEF_HPP_
#define MUELU_UZAWASMOOTHER_DEF_HPP_

#include "Teuchos_ArrayViewDecl.hpp"
#include "Teuchos_ScalarTraits.hpp"

#include "MueLu_ConfigDefs.hpp"

#include <Xpetra_Matrix.hpp>
#include <Xpetra_CrsMatrixWrap.hpp>
#include <Xpetra_BlockedCrsMatrix.hpp>
#include <Xpetra_MultiVectorFactory.hpp>
#include <Xpetra_VectorFactory.hpp>

#include "MueLu_UzawaSmoother_decl.hpp"
#include "MueLu_Level.hpp"
#include "MueLu_Utilities.hpp"
#include "MueLu_Monitor.hpp"
#include "MueLu_HierarchyHelpers.hpp"
#include "MueLu_SmootherBase.hpp"
#include "MueLu_SubBlockAFactory.hpp"

// include files for default FactoryManager
#include "MueLu_SchurComplementFactory.hpp"
#include "MueLu_DirectSolver.hpp"
#include "MueLu_SmootherFactory.hpp"
#include "MueLu_FactoryManager.hpp"

namespace MueLu {

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::UzawaSmoother()
    : type_("Uzawa"), A_(Teuchos::null)
  {
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::~UzawaSmoother() {}

  template <class Scalar, class LocalOrdinal, class GlobalOrdinal, class Node>
  RCP<const ParameterList> UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::GetValidParameterList() const {
    RCP<ParameterList> validParamList = rcp(new ParameterList());

    validParamList->set< RCP<const FactoryBase> >("A",                  Teuchos::null, "Generating factory of the matrix A");
    validParamList->set< Scalar >                ("Damping factor",     1.0, "Damping/Scaling factor in SIMPLE");
    validParamList->set< LocalOrdinal >          ("Sweeps",             1, "Number of SIMPLE sweeps (default = 1)");

    return validParamList;
  }

  //! Add a factory manager at a specific position
  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::AddFactoryManager(RCP<const FactoryManagerBase> FactManager, int pos) {
    TEUCHOS_TEST_FOR_EXCEPTION(pos < 0, Exceptions::RuntimeError, "MueLu::UzawaSmoother::AddFactoryManager: parameter \'pos\' must not be negative! error.");

    size_t myPos = Teuchos::as<size_t>(pos);

    if (myPos < FactManager_.size()) {
      // replace existing entris in FactManager_ vector
      FactManager_.at(myPos) = FactManager;
    } else if( myPos == FactManager_.size()) {
      // add new Factory manager in the end of the vector
      FactManager_.push_back(FactManager);
    } else { // if(myPos > FactManager_.size())
      RCP<Teuchos::FancyOStream> out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
      *out << "Warning: cannot add new FactoryManager at proper position " << pos << ". The FactoryManager is just appended to the end. Check this!" << std::endl;

      // add new Factory manager in the end of the vector
      FactManager_.push_back(FactManager);
    }

  }


  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::SetVelocityPredictionFactoryManager(RCP<FactoryManager> FactManager) {
    AddFactoryManager(FactManager, 0); // overwrite factory manager for predicting the primary variable
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::SetSchurCompFactoryManager(RCP<FactoryManager> FactManager) {
    AddFactoryManager(FactManager, 1); // overwrite factory manager for SchurComplement
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::DeclareInput(Level &currentLevel) const {
    currentLevel.DeclareInput("A",this->GetFactory("A").get());

    TEUCHOS_TEST_FOR_EXCEPTION(FactManager_.size() != 2, Exceptions::RuntimeError,"MueLu::UzawaSmoother::DeclareInput: You have to declare two FactoryManagers with a \"Smoother\" object: One for predicting the primary variable and one for the SchurComplement system. The smoother for the SchurComplement system needs a SchurComplementFactory as input for variable \"A\". make sure that you use the same proper damping factors for omega both in the SchurComplementFactory and in the SIMPLE smoother!");

    // loop over all factory managers for the subblocks of blocked operator A
    std::vector<Teuchos::RCP<const FactoryManagerBase> >::const_iterator it;
    for(it = FactManager_.begin(); it!=FactManager_.end(); ++it) {
      SetFactoryManager currentSFM  (rcpFromRef(currentLevel),   *it);

      // request "Smoother" for current subblock row.
      currentLevel.DeclareInput("PreSmoother",(*it)->GetFactory("Smoother").get());
    }
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Setup(Level &currentLevel) {

    FactoryMonitor m(*this, "Setup blocked Uzawa Smoother", currentLevel);

    if (SmootherPrototype::IsSetup() == true)
      this->GetOStream(Warnings0) << "MueLu::UzawaSmoother::Setup(): Setup() has already been called";

    // extract blocked operator A from current level
    A_ = Factory::Get<RCP<Matrix> > (currentLevel, "A");

    RCP<BlockedCrsMatrix> bA = Teuchos::rcp_dynamic_cast<BlockedCrsMatrix>(A_);
    TEUCHOS_TEST_FOR_EXCEPTION(bA == Teuchos::null, Exceptions::BadCast, "MueLu::UzawaSmoother::Setup: input matrix A is not of type BlockedCrsMatrix! error.");

    // store map extractors
    rangeMapExtractor_ = bA->getRangeMapExtractor();
    domainMapExtractor_ = bA->getDomainMapExtractor();

    // Store the blocks in local member variables
    Teuchos::RCP<CrsMatrix> A00 = bA->getMatrix(0, 0);
    Teuchos::RCP<CrsMatrix> A01 = bA->getMatrix(0, 1);
    Teuchos::RCP<CrsMatrix> A10 = bA->getMatrix(1, 0);
    Teuchos::RCP<CrsMatrix> A11 = bA->getMatrix(1, 1);

    Teuchos::RCP<CrsMatrixWrap> Op00 = Teuchos::rcp(new CrsMatrixWrap(A00));
    Teuchos::RCP<CrsMatrixWrap> Op01 = Teuchos::rcp(new CrsMatrixWrap(A01));
    Teuchos::RCP<CrsMatrixWrap> Op10 = Teuchos::rcp(new CrsMatrixWrap(A10));
    Teuchos::RCP<CrsMatrixWrap> Op11 = Teuchos::rcp(new CrsMatrixWrap(A11));

    F_ = Teuchos::rcp_dynamic_cast<Matrix>(Op00);
    G_ = Teuchos::rcp_dynamic_cast<Matrix>(Op01);
    D_ = Teuchos::rcp_dynamic_cast<Matrix>(Op10);
    Z_ = Teuchos::rcp_dynamic_cast<Matrix>(Op11);

    // TODO move this to BlockedCrsMatrix->getMatrix routine...
    F_->CreateView("stridedMaps", bA->getRangeMap(0), bA->getDomainMap(0));
    G_->CreateView("stridedMaps", bA->getRangeMap(0), bA->getDomainMap(1));
    D_->CreateView("stridedMaps", bA->getRangeMap(1), bA->getDomainMap(0));
    Z_->CreateView("stridedMaps", bA->getRangeMap(1), bA->getDomainMap(1));

    // Set the Smoother
    // carefully switch to the SubFactoryManagers (defined by the users)
    {
      RCP<const FactoryManagerBase> velpredictFactManager = FactManager_.at(0);
      SetFactoryManager currentSFM  (rcpFromRef(currentLevel), velpredictFactManager);
      velPredictSmoo_ = currentLevel.Get< RCP<SmootherBase> >("PreSmoother",velpredictFactManager->GetFactory("Smoother").get());
    }
    {
      RCP<const FactoryManagerBase> schurFactManager = FactManager_.at(1);
      SetFactoryManager currentSFM  (rcpFromRef(currentLevel), schurFactManager);
      schurCompSmoo_ = currentLevel.Get< RCP<SmootherBase> >("PreSmoother", schurFactManager->GetFactory("Smoother").get());
    }

    SmootherPrototype::IsSetup(true);
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Apply(MultiVector& X, const MultiVector& B, bool InitialGuessIsZero) const
  {
    TEUCHOS_TEST_FOR_EXCEPTION(SmootherPrototype::IsSetup() == false, Exceptions::RuntimeError, "MueLu::UzawaSmoother::Apply(): Setup() has not been called");

    Teuchos::RCP<Teuchos::FancyOStream> fos = Teuchos::getFancyOStream(Teuchos::rcpFromRef(std::cout));

    SC zero = Teuchos::ScalarTraits<SC>::zero(), one = Teuchos::ScalarTraits<SC>::one();

    // extract parameters from internal parameter list
    const ParameterList & pL = Factory::GetParameterList();
    LocalOrdinal nSweeps = pL.get<LocalOrdinal>("Sweeps");
    Scalar omega = pL.get<Scalar>("Damping factor");

    // wrap current solution vector in RCP
    RCP<MultiVector> rcpX = Teuchos::rcpFromRef(X);

    // create residual vector
    // contains current residual of current solution X with rhs B
    RCP<MultiVector> residual = MultiVectorFactory::Build(B.getMap(), B.getNumVectors());

    // incrementally improve solution vector X
    for (LocalOrdinal run = 0; run < nSweeps; ++run) {
      // 1) calculate current residual
      residual->update(one,B,zero); // residual = B
      A_->apply(*rcpX, *residual, Teuchos::NO_TRANS, -one, one);

      // split residual vector
      Teuchos::RCP<MultiVector> r1 = rangeMapExtractor_->ExtractVector(residual, 0);
      Teuchos::RCP<MultiVector> r2 = rangeMapExtractor_->ExtractVector(residual, 1);

      // 2) solve F * \Delta \tilde{x}_1 = r_1
      //    start with zero guess \Delta \tilde{x}_1
      RCP<MultiVector> xtilde1 = MultiVectorFactory::Build(F_->getRowMap(),1);
      xtilde1->putScalar(zero);
      velPredictSmoo_->Apply(*xtilde1,*r1);

      // 3) calculate rhs for SchurComp equation
      //    r_2 - D \Delta \tilde{x}_1
      RCP<MultiVector> schurCompRHS = MultiVectorFactory::Build(Z_->getRowMap(),1);
      D_->apply(*xtilde1,*schurCompRHS);
      schurCompRHS->update(one,*r2,-one);

      // 4) solve SchurComp equation
      //    start with zero guess \Delta \tilde{x}_2
      RCP<MultiVector> xtilde2 = MultiVectorFactory::Build(Z_->getRowMap(),1);
      xtilde2->putScalar(zero);
      schurCompSmoo_->Apply(*xtilde2,*schurCompRHS);

      // 5) extract parts of solution vector X
      Teuchos::RCP<MultiVector> x1 = domainMapExtractor_->ExtractVector(rcpX, 0);
      Teuchos::RCP<MultiVector> x2 = domainMapExtractor_->ExtractVector(rcpX, 1);

      // 6) update solution vector with increments xhat1 and xhat2
      //    rescale increment for x2 with omega_
      x1->update(omega,*xtilde1,one); // x1 = x1_old + omega xtilde1
      x2->update(omega,*xtilde2,one); // x2 = x2_old + omega xtilde2

      // write back solution in global vector X
      domainMapExtractor_->InsertVector(x1, 0, rcpX);
      domainMapExtractor_->InsertVector(x2, 1, rcpX);

    }
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  RCP<MueLu::SmootherPrototype<Scalar, LocalOrdinal, GlobalOrdinal, Node> >
  UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::Copy() const {
    return rcp( new UzawaSmoother(*this) );
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  std::string UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::description() const {
    std::ostringstream out;
    out << SmootherPrototype::description();
    out << "{type = " << type_ << "}";
    return out.str();
  }

  template <class Scalar,class LocalOrdinal, class GlobalOrdinal, class Node>
  void UzawaSmoother<Scalar, LocalOrdinal, GlobalOrdinal, Node>::print(Teuchos::FancyOStream &out, const VerbLevel verbLevel) const {
    MUELU_DESCRIBE;

    if (verbLevel & Parameters0) {
      out0 << "Prec. type: " << type_ << /*" Sweeps: " << nSweeps_ << " damping: " << omega_ <<*/ std::endl;
    }

    if (verbLevel & Debug) {
      out0 << "IsSetup: " << Teuchos::toString(SmootherPrototype::IsSetup()) << std::endl;
    }
  }

} // namespace MueLu


#endif /* MUELU_UZAWASMOOTHER_DEF_HPP_ */