/usr/include/trilinos/Teuchos_SerialDenseHelpers.hpp is in libtrilinos-teuchos-dev 12.4.2-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 | // @HEADER
// ***********************************************************************
//
// Teuchos: Common Tools Package
// Copyright (2004) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER
#ifndef _TEUCHOS_SERIALDENSEHELPERS_HPP_
#define _TEUCHOS_SERIALDENSEHELPERS_HPP_
/*! \file Teuchos_SerialDenseHelpers.hpp
\brief Non-member helper functions on the templated serial, dense matrix/vector classes.
*/
#include "Teuchos_ScalarTraits.hpp"
#include "Teuchos_DataAccess.hpp"
#include "Teuchos_ConfigDefs.hpp"
#include "Teuchos_Assert.hpp"
#include "Teuchos_SerialDenseMatrix.hpp"
#include "Teuchos_SerialSymDenseMatrix.hpp"
#include "Teuchos_SerialBandDenseMatrix.hpp"
#include "Teuchos_SerialDenseVector.hpp"
namespace Teuchos {
/*! \relates SerialSymDenseMatrix
\brief A templated, non-member, helper function for computing the matrix triple-product: B = alpha*W^T*A*W or B = alpha*W*A*W^T.
\param transw - [in] Compute B = alpha*W^T*A*W if transw = Teuchos::TRANS, else compute B = alpha*W*A*W^T if transw = Teuchos::NO_TRANS.
\param alpha - [in] The scaling factor.
\param A - [in] SerialSymDenseMatrix
\param W - [in] SerialDenseMatrix
\param B - [out] SerialSymDenseMatrix
\note The syntax for calling this function is: <tt> Teuchos::symMatTripleProduct<int,double>( Teuchos::TRANS, alpha, A, W, B ) </tt>
*/
template<typename OrdinalType, typename ScalarType>
void symMatTripleProduct( ETransp transw, const ScalarType alpha, const SerialSymDenseMatrix<OrdinalType, ScalarType>& A,
const SerialDenseMatrix<OrdinalType, ScalarType>& W, SerialSymDenseMatrix<OrdinalType, ScalarType>& B )
{
// Local variables.
// Note: dimemensions of W are obtained so we can compute W^T*A*W for either cases.
OrdinalType A_nrowcols = A.numRows(); // A is a symmetric matrix and is assumed square.
OrdinalType B_nrowcols = (ETranspChar[transw]!='N') ? W.numCols() : W.numRows();
OrdinalType W_nrows = (ETranspChar[transw]!='N') ? W.numRows() : W.numCols();
OrdinalType W_ncols = (ETranspChar[transw]!='N') ? W.numCols() : W.numRows();
bool isBUpper = B.upper();
// Check for consistent dimensions.
TEUCHOS_TEST_FOR_EXCEPTION( B_nrowcols != B.numRows(), std::out_of_range,
"Teuchos::symMatTripleProduct<>() : "
"Num Rows/Cols B (" << B.numRows() << ") inconsistent with W ("<< B_nrowcols << ")");
TEUCHOS_TEST_FOR_EXCEPTION( A_nrowcols != W_nrows, std::out_of_range,
"Teuchos::symMatTripleProduct<>() : "
"Num Rows/Cols A (" << A_nrowcols << ") inconsistent with W ("<< W_nrows << ")");
// Scale by zero, initialized B to zeros and return.
if ( alpha == ScalarTraits<ScalarType>::zero() )
{
B.putScalar();
return;
}
// Workspace.
SerialDenseMatrix<OrdinalType, ScalarType> AW;
// BLAS class.
BLAS<OrdinalType, ScalarType> blas;
ScalarType one = Teuchos::ScalarTraits<ScalarType>::one();
ScalarType zero = Teuchos::ScalarTraits<ScalarType>::zero();
// Separate two cases because BLAS only supports symmetric matrix-matrix multply w/o transposes.
if (ETranspChar[transw]!='N') {
// Size AW to compute A*W
AW.shapeUninitialized(A_nrowcols,W_ncols);
// A*W
AW.multiply( Teuchos::LEFT_SIDE, alpha, A, W, ScalarTraits<ScalarType>::zero() );
// B = W^T*A*W
if (isBUpper) {
for (int j=0; j<B_nrowcols; ++j)
blas.GEMV( transw, W_nrows, j+1, one, W.values(), W.stride(), AW[j], 1, zero, &B(0,j), 1 );
}
else {
for (int j=0; j<B_nrowcols; ++j)
blas.GEMV( transw, W_nrows, B_nrowcols-j, one, W[j], W.stride(), AW[j], 1, zero, &B(j,j), 1 );
}
}
else {
// Size AW to compute W*A
AW.shapeUninitialized(W_ncols, A_nrowcols);
// W*A
AW.multiply( Teuchos::RIGHT_SIDE, alpha, A, W, ScalarTraits<ScalarType>::zero() );
// B = W*A*W^T
if (isBUpper) {
for (int j=0; j<B_nrowcols; ++j)
for (int i=0; i<=j; ++i)
blas.GEMV( transw, 1, A_nrowcols, one, &AW(i,0), AW.stride(), &W(j,0), W.stride(), zero, &B(i,j), 1 );
}
else {
for (int j=0; j<B_nrowcols; ++j)
for (int i=j; i<B_nrowcols; ++i)
blas.GEMV( transw, 1, A_nrowcols, one, &AW(i,0), AW.stride(), &W(j,0), W.stride(), zero, &B(i,j), 1 );
}
}
return;
}
/*! \relates SerialDenseMatrix
\brief A templated, non-member, helper function for viewing or copying a column of a SerialDenseMatrix as a SerialDenseVector.
\param CV - [in] Enumerated type set to Teuchos::Copy or Teuchos::View
\param A - [in] SerialDenseMatrix
\param col - [in] Integer indicating which column of A to return
\note The syntax for calling this function is: <tt>Teuchos::SerialDenseVector<int,double> col_j = Teuchos::getCol<int,double>( Teuchos::View, A, j )</tt>
*/
template<typename OrdinalType, typename ScalarType>
SerialDenseVector<OrdinalType,ScalarType>
getCol( DataAccess CV, SerialDenseMatrix<OrdinalType, ScalarType>& A, const OrdinalType col )
{
return SerialDenseVector<OrdinalType, ScalarType>(CV, A[col], A.numRows());
}
/*! \relates SerialDenseMatrix
\brief A templated, non-member, helper function for setting a SerialDenseMatrix column using a SerialDenseVector.
\param v - [in] SerialDenseVector
\param col - [in] Integer indicating which column of A to replace with v
\param A - [out] SerialDenseMatrix
\note The syntax for calling this function is: bool err = Teuchos::setCol<int,double>( v, j, A )</tt>
*/
template<typename OrdinalType, typename ScalarType>
bool setCol( const SerialDenseVector<OrdinalType, ScalarType>& v,
const OrdinalType col,
SerialDenseMatrix<OrdinalType, ScalarType>& A )
{
if (v.length() != A.numRows()) return false;
std::copy(v.values(),v.values()+v.length(),A[col]);
return true;
}
/*! \relates SerialBandDenseMatrix
\brief A templated, non-member, helper function for converting a SerialDenseMatrix to a SerialBandDenseMatrix.
\param A - [in] SerialDenseMatrix to be converted
\param kl - [in] Integer indicating desired lower bandwidth of band matrix.
\param ku - [in] Integer indicating desired upper bandwidth of band matrix.
\param factorFormat - [in] Bool indicating whether kl extra superdiagonals should be stored to be used by factorization.
\note The syntax for calling this function is: <tt>Teuchos::SerialBandDenseMatrix<int,double> AB = Teuchos::generalToBanded<int,double>( A, kl, ku, true )</tt>
*/
template<typename OrdinalType, typename ScalarType>
Teuchos::RCP<SerialBandDenseMatrix<OrdinalType, ScalarType> >
generalToBanded(const RCP<SerialDenseMatrix<OrdinalType,ScalarType> >& A,
const OrdinalType kl, const OrdinalType ku,
const bool factorFormat)
{
OrdinalType m = A->numRows();
OrdinalType n = A->numCols();
// Check that the new matrix is consistent.
TEUCHOS_TEST_FOR_EXCEPTION(A->values()==0, std::invalid_argument,
"SerialBandDenseSolver<T>::generalToBanded: A is an empty SerialDenseMatrix<T>!");
TEUCHOS_TEST_FOR_EXCEPTION(kl<0 || kl>m, std::invalid_argument,
"SerialBandDenseSolver<T>::generalToBanded: The lower bandwidth kl is invalid!");
TEUCHOS_TEST_FOR_EXCEPTION(ku<0 || ku>n, std::invalid_argument,
"SerialBandDenseSolver<T>::generalToBanded: The upper bandwidth ku is invalid!");
OrdinalType extraBands = (factorFormat ? kl : 0);
Teuchos::RCP<SerialBandDenseMatrix<OrdinalType, ScalarType> > AB =
rcp( new SerialBandDenseMatrix<OrdinalType,ScalarType>(m,n,kl,extraBands+ku,true));
for (OrdinalType j = 0; j < n; j++) {
for (OrdinalType i=TEUCHOS_MAX(0,j-ku); i<=TEUCHOS_MIN(m-1,j+kl); i++) {
(*AB)(i,j) = (*A)(i,j);
}
}
return(AB);
}
/*! \relates SerialBandDenseMatrix
\brief A templated, non-member, helper function for converting a SerialBandDenseMatrix to a SerialDenseMatrix.
\param A - [in] SerialBandDenseMatrix to be converted
\note The syntax for calling this function is: <tt>Teuchos::SerialDenseMatrix<int,double> A = Teuchos::bandedToGeneral<int,double>( AB )</tt>
*/
template<typename OrdinalType, typename ScalarType>
Teuchos::RCP<SerialDenseMatrix<OrdinalType, ScalarType> >
bandedToGeneral(const RCP<SerialBandDenseMatrix<OrdinalType,ScalarType> >& AB)
{
OrdinalType m = AB->numRows();
OrdinalType n = AB->numCols();
OrdinalType kl = AB->lowerBandwidth();
OrdinalType ku = AB->upperBandwidth();
// Check that the new matrix is consistent.
TEUCHOS_TEST_FOR_EXCEPTION(AB->values()==0, std::invalid_argument,
"SerialBandDenseSolver<T>::bandedToGeneral: AB is an empty SerialBandDenseMatrix<T>!");
Teuchos::RCP<SerialDenseMatrix<OrdinalType, ScalarType> > A = rcp( new SerialDenseMatrix<OrdinalType,ScalarType>(m,n) );
for (OrdinalType j = 0; j < n; j++) {
for (OrdinalType i=TEUCHOS_MAX(0,j-ku); i<=TEUCHOS_MIN(m-1,j+kl); i++) {
(*A)(i,j) = (*AB)(i,j);
}
}
return(A);
}
} // namespace Teuchos
#endif /* _TEUCHOS_SERIALDENSEHELPERS_HPP_ */
|