/usr/include/trilinos/Tsqr_RMessenger.hpp is in libtrilinos-tpetra-dev 12.4.2-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 | //@HEADER
// ************************************************************************
//
// Kokkos: Node API and Parallel Node Kernels
// Copyright (2008) Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER
#ifndef __TSQR_RMessenger_hpp
#define __TSQR_RMessenger_hpp
#include <Tsqr_MatView.hpp>
#include <Tsqr_MessengerBase.hpp>
#include <Teuchos_RCP.hpp>
#include <algorithm>
#include <vector>
namespace TSQR {
/// \class RMessenger
/// \brief Send, receive, and broadcast square R factors.
///
/// Object that handles sending, receiving, and broadcasting square
/// upper triangular matrices containing data of type Scalar, and
/// indexed by indices of type Ordinal.
template<class Ordinal, class Scalar>
class RMessenger {
public:
typedef Scalar scalar_type;
typedef Ordinal ordinal_type;
typedef MessengerBase< Scalar > messenger_type;
typedef Teuchos::RCP< messenger_type > messenger_ptr;
/// \brief Constructor
///
/// \param messenger [in/out] Pointer to the communicator wrapper.
RMessenger (const messenger_ptr& messenger) :
messenger_ (messenger) {}
template<class ConstMatrixViewType>
void
send (const ConstMatrixViewType& R, const int destProc)
{
pack (R);
messenger_->send (&buffer_[0], buffer_.size(), destProc, 0);
}
template<class MatrixViewType>
void
recv (MatrixViewType& R, const int srcProc)
{
const typename MatrixViewType::ordinal_type ncols = R.ncols();
const Ordinal buflen = buffer_length (ncols);
buffer_.resize (buflen);
messenger_->recv (&buffer_[0], buflen, srcProc, 0);
unpack (R);
}
template<class MatrixViewType>
void
broadcast (MatrixViewType& R, const int rootProc)
{
const int myRank = messenger_->rank();
if (myRank == rootProc)
pack (R);
messenger_->broadcast (&buffer_[0], buffer_length (R.ncols()), rootProc);
if (myRank != rootProc)
unpack (R);
}
//! Copy constructor
RMessenger (const RMessenger& rhs) :
messenger_ (rhs.messenger_),
buffer_ (0) // don't need to copy the buffer
{}
//! Assignment operator
RMessenger& operator= (const RMessenger& rhs) {
if (this != &rhs)
{
this->messenger_ = rhs.messenger_;
// Don't need to do anything to this->buffer_; the various
// operations such as pack() will resize it as necessary.
}
return *this;
}
private:
messenger_ptr messenger_;
std::vector< Scalar > buffer_;
//! Default construction doesn't make sense, so we forbid it syntactically.
RMessenger ();
/// \brief Buffer length as a function of R factor dimension.
///
/// \param ncols [in] Number of columns (and number of rows)
/// in the R factor input.
Ordinal buffer_length (const Ordinal ncols) const {
return (ncols * (ncols + Ordinal(1))) / Ordinal(2);
}
template<class ConstMatrixViewType>
void
pack (const ConstMatrixViewType& R)
{
typedef typename ConstMatrixViewType::scalar_type view_scalar_type;
typedef typename ConstMatrixViewType::ordinal_type view_ordinal_type;
typedef typename std::vector< Scalar >::iterator iter_type;
const view_ordinal_type ncols = R.ncols();
const Ordinal buf_length = buffer_length (ncols);
buffer_.resize (buf_length);
iter_type iter = buffer_.begin();
for (view_ordinal_type j = 0; j < ncols; ++j)
{
const view_scalar_type* const R_j = &R(0,j);
std::copy (R_j, R_j + (j+1), iter);
iter += (j+1);
}
}
template<class MatrixViewType>
void
unpack (MatrixViewType& R)
{
typedef typename MatrixViewType::ordinal_type view_ordinal_type;
typedef typename std::vector< Scalar >::const_iterator const_iter_type;
const view_ordinal_type ncols = R.ncols();
const_iter_type iter = buffer_.begin();
for (view_ordinal_type j = 0; j < ncols; ++j)
{
std::copy (iter, iter + (j+1), &R(0,j));
iter += (j+1);
}
}
};
/// \brief Distribute a stack of R factors.
///
/// \param R_stack [in] nprocs*ncols by ncols stack of square upper
/// triangular matrices. The whole stack is stored in
/// column-major order.
///
/// \param R_local [out] ncols by ncols upper triangular matrix,
/// stored in column-major order (in unpacked form).
///
/// \param messenger [in/out] Object that handles communication
///
template<class MatrixViewType, class ConstMatrixViewType>
void
scatterStack (const ConstMatrixViewType& R_stack,
MatrixViewType& R_local,
const Teuchos::RCP<MessengerBase<typename MatrixViewType::scalar_type> >& messenger)
{
typedef typename MatrixViewType::ordinal_type ordinal_type;
typedef typename MatrixViewType::scalar_type scalar_type;
typedef ConstMatView< ordinal_type, scalar_type > const_view_type;
const int nprocs = messenger->size();
const int my_rank = messenger->rank();
if (my_rank == 0) {
const ordinal_type ncols = R_stack.ncols();
// Copy data from top ncols x ncols block of R_stack into R_local.
const_view_type R_stack_view_first (ncols, ncols, R_stack.get(), R_stack.lda());
deep_copy (R_local, R_stack_view_first);
// Loop through all other processors, sending each the next
// ncols x ncols block of R_stack.
RMessenger< ordinal_type, scalar_type > sender (messenger);
for (int destProc = 1; destProc < nprocs; ++destProc) {
const scalar_type* const R_ptr = R_stack.get() + destProc*ncols;
const_view_type R_stack_view_cur (ncols, ncols, R_ptr, R_stack.lda());
sender.send (R_stack_view_cur, destProc);
}
}
else {
const int srcProc = 0;
R_local.fill (scalar_type(0));
RMessenger< ordinal_type, scalar_type > receiver (messenger);
receiver.recv (R_local, srcProc);
}
}
template<class MatrixViewType, class ConstMatrixViewType>
void
gatherStack (MatrixViewType& R_stack,
ConstMatrixViewType& R_local,
const Teuchos::RCP<MessengerBase<typename MatrixViewType::scalar_type> >& messenger)
{
typedef typename MatrixViewType::ordinal_type ordinal_type;
typedef typename MatrixViewType::scalar_type scalar_type;
typedef MatView<ordinal_type, scalar_type> mat_view_type;
const int nprocs = messenger->size();
const int my_rank = messenger->rank();
if (my_rank == 0) {
const ordinal_type ncols = R_stack.ncols();
// Copy data from R_local into top ncols x ncols block of R_stack.
mat_view_type R_stack_view_first (ncols, ncols, R_stack.get(), R_stack.lda());
deep_copy (R_stack_view_first, R_local);
// Loop through all other processors, fetching their matrix data.
RMessenger< ordinal_type, scalar_type > receiver (messenger);
for (int srcProc = 1; srcProc < nprocs; ++srcProc) {
const scalar_type* const R_ptr = R_stack.get() + srcProc*ncols;
mat_view_type R_stack_view_cur (ncols, ncols, R_ptr, R_stack.lda());
// Fill (the lower triangle) with zeros, since
// RMessenger::recv() only writes to the upper triangle.
R_stack_view_cur.fill (scalar_type (0));
receiver.recv (R_stack_view_cur, srcProc);
}
}
else {
// We only read R_stack on Proc 0, not on this proc.
// Send data from R_local to Proc 0.
const int destProc = 0;
RMessenger<ordinal_type, scalar_type> sender (messenger);
sender.send (R_local, destProc);
}
messenger->barrier ();
}
} // namespace TSQR
#endif // __TSQR_RMessenger_hpp
|