libtrilinos-xpetra-dev 12.4.2-2 / usr / include / trilinos / Xpetra_CrsMatrix.hpp

This file is indexed.

/usr/include/trilinos/Xpetra_CrsMatrix.hpp is in libtrilinos-xpetra-dev 12.4.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
// @HEADER
//
// ***********************************************************************
//
//             Xpetra: A linear algebra interface package
//                  Copyright 2012 Sandia Corporation
//
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact
//                    Jonathan Hu       (jhu@sandia.gov)
//                    Andrey Prokopenko (aprokop@sandia.gov)
//                    Ray Tuminaro      (rstumin@sandia.gov)
//
// ***********************************************************************
//
// @HEADER
#ifndef XPETRA_CRSMATRIX_HPP
#define XPETRA_CRSMATRIX_HPP

/* this file is automatically generated - do not edit (see script/interfaces.py) */

#include <Kokkos_DefaultNode.hpp>
#include "Xpetra_ConfigDefs.hpp"
#include "Xpetra_RowMatrix.hpp"
#include "Xpetra_DistObject.hpp"
#include "Xpetra_CrsGraph.hpp"
#include "Xpetra_Vector.hpp"

#ifdef HAVE_XPETRA_KOKKOS_REFACTOR
#include <Kokkos_StaticCrsGraph.hpp>
#include <Kokkos_CrsMatrix.hpp>
#endif

namespace Xpetra {

  template <class Scalar = double,
            class LocalOrdinal = CrsGraph<>::local_ordinal_type,
            class GlobalOrdinal =
              typename CrsGraph<LocalOrdinal>::global_ordinal_type,
            class Node =
              typename CrsGraph<LocalOrdinal, GlobalOrdinal>::node_type>
  class CrsMatrix
    : public RowMatrix<Scalar,LocalOrdinal,GlobalOrdinal,Node>,
      public DistObject<char, LocalOrdinal,GlobalOrdinal,Node>
  {
  public:
    typedef Scalar scalar_type;
    typedef LocalOrdinal local_ordinal_type;
    typedef GlobalOrdinal global_ordinal_type;
    typedef Node node_type;

    //! @name Constructor/Destructor Methods
    //@{

    //! Destructor.
    virtual ~CrsMatrix() { }

    //@}
    //! @name Insertion/Removal Methods
    //@{

    //! Insert matrix entries, using global IDs.
    virtual void
    insertGlobalValues (GlobalOrdinal globalRow,
                        const ArrayView<const GlobalOrdinal>& cols,
                        const ArrayView<const Scalar>& vals) = 0;

    //! Insert matrix entries, using local IDs.
    virtual void insertLocalValues(LocalOrdinal localRow, const ArrayView< const LocalOrdinal > &cols, const ArrayView< const Scalar > &vals)= 0;

    //! Replace matrix entries, using global IDs.
    virtual void replaceGlobalValues(GlobalOrdinal globalRow, const ArrayView< const GlobalOrdinal > &cols, const ArrayView< const Scalar > &vals)= 0;

    //! Replace matrix entries, using local IDs.
    virtual void replaceLocalValues(LocalOrdinal localRow, const ArrayView< const LocalOrdinal > &cols, const ArrayView< const Scalar > &vals)= 0;

    //! Set all matrix entries equal to scalarThis.
    virtual void setAllToScalar(const Scalar &alpha)= 0;

    //! Scale the current values of a matrix, this = alpha*this.
    virtual void scale(const Scalar &alpha)= 0;

    //! Allocates and returns ArrayRCPs of the Crs arrays --- This is an Xpetra-only routine.
    //** \warning This is an expert-only routine and should not be called from user code. */
    virtual void allocateAllValues(size_t numNonZeros,ArrayRCP<size_t> & rowptr, ArrayRCP<LocalOrdinal> & colind, ArrayRCP<Scalar> & values)=0;

    //! Sets the 1D pointer arrays of the graph.
    virtual void setAllValues(const ArrayRCP<size_t> & rowptr, const ArrayRCP<LocalOrdinal> & colind, const ArrayRCP<Scalar> & values)=0;

    //! Gets the 1D pointer arrays of the graph.
    virtual void getAllValues(ArrayRCP<const size_t>& rowptr, ArrayRCP<const LocalOrdinal>& colind, ArrayRCP<const Scalar>& values) const = 0;

    //@}

    //! @name Transformational Methods
    //@{

    //!
    virtual void resumeFill(const RCP< ParameterList > &params=null)= 0;

    //! Signal that data entry is complete, specifying domain and range maps.
    virtual void fillComplete(const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &domainMap, const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > > &rangeMap, const RCP< ParameterList > &params=null)= 0;

    //! Signal that data entry is complete.
    virtual void fillComplete(const RCP< ParameterList > &params=null)= 0;

    //!  Replaces the current domainMap and importer with the user-specified objects.
    virtual void replaceDomainMapAndImporter(const Teuchos::RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > >& newDomainMap, Teuchos::RCP<const Import<LocalOrdinal,GlobalOrdinal,Node> >  & newImporter)=0;

    //! Expert static fill complete
    virtual void expertStaticFillComplete(const RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > & domainMap,
                                          const RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > & rangeMap,
                                          const RCP<const Import<LocalOrdinal,GlobalOrdinal,Node> > &importer=Teuchos::null,
                                          const RCP<const Export<LocalOrdinal,GlobalOrdinal,Node> > &exporter=Teuchos::null,
                                          const RCP<ParameterList> &params=Teuchos::null) = 0;
    //@}

    //! @name Methods implementing RowMatrix
    //@{

    //! Returns the Map that describes the row distribution in this matrix.
    virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > >  getRowMap() const = 0;

    //! Returns the Map that describes the column distribution in this matrix.
    virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > >  getColMap() const = 0;

    //! Returns the CrsGraph associated with this matrix.
    virtual RCP< const CrsGraph< LocalOrdinal, GlobalOrdinal, Node > > getCrsGraph() const = 0;

    //! Number of global elements in the row map of this matrix.
    virtual global_size_t getGlobalNumRows() const = 0;

    //! Number of global columns in the matrix.
    virtual global_size_t getGlobalNumCols() const = 0;

    //! Returns the number of matrix rows owned on the calling node.
    virtual size_t getNodeNumRows() const = 0;

    //! Returns the global number of entries in this matrix.
    virtual global_size_t getGlobalNumEntries() const = 0;

    //! Returns the local number of entries in this matrix.
    virtual size_t getNodeNumEntries() const = 0;

    //! Returns the current number of entries on this node in the specified local row.
    virtual size_t getNumEntriesInLocalRow(LocalOrdinal localRow) const = 0;

    //! Returns the number of global diagonal entries, based on global row/column index comparisons.
    virtual global_size_t getGlobalNumDiags() const = 0;

    //! Returns the number of local diagonal entries, based on global row/column index comparisons.
    virtual size_t getNodeNumDiags() const = 0;

    //! Returns the maximum number of entries across all rows/columns on all nodes.
    virtual size_t getGlobalMaxNumRowEntries() const = 0;

    //! Returns the maximum number of entries across all rows/columns on this node.
    virtual size_t getNodeMaxNumRowEntries() const = 0;

    //! If matrix indices are in the local range, this function returns true. Otherwise, this function returns false.
    virtual bool isLocallyIndexed() const = 0;

    //! If matrix indices are in the global range, this function returns true. Otherwise, this function returns false.
    virtual bool isGloballyIndexed() const = 0;

    //! Returns true if the matrix is in compute mode, i.e. if fillComplete() has been called.
    virtual bool isFillComplete() const = 0;

    //! Returns true if the matrix is in edit mode.
    virtual bool isFillActive() const = 0;

    //! Returns the Frobenius norm of the matrix.
    virtual typename ScalarTraits< Scalar >::magnitudeType getFrobeniusNorm() const = 0;

    //! Returns true if getLocalRowView() and getGlobalRowView() are valid for this class.
    virtual bool supportsRowViews() const = 0;

    //! Extract a const, non-persisting view of global indices in a specified row of the matrix.
    virtual void getGlobalRowView(GlobalOrdinal GlobalRow, ArrayView< const GlobalOrdinal > &indices, ArrayView< const Scalar > &values) const = 0;

    //! Extract a list of entries in a specified global row of this matrix. Put into pre-allocated storage.
    virtual void getGlobalRowCopy(GlobalOrdinal GlobalRow, const ArrayView<GlobalOrdinal> &indices, const ArrayView<Scalar> &values, size_t &numEntries) const = 0;

    //! Extract a const, non-persisting view of local indices in a specified row of the matrix.
    virtual void getLocalRowView(LocalOrdinal LocalRow, ArrayView< const LocalOrdinal > &indices, ArrayView< const Scalar > &values) const = 0;

    //! Get a copy of the diagonal entries owned by this node, with local row indices.
    virtual void getLocalDiagCopy(Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag) const = 0;

    //! Get offsets of the diagonal entries in the matrix.
    virtual void getLocalDiagOffsets(Teuchos::ArrayRCP<size_t> &offsets) const = 0;

    //! Get a copy of the diagonal entries owned by this node, with local row indices, using row offsets.
    virtual void getLocalDiagCopy(Vector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &diag, const Teuchos::ArrayView<const size_t> &offsets) const = 0;

    virtual void removeEmptyProcessesInPlace(const RCP<const Map<LocalOrdinal, GlobalOrdinal, Node> >& newMap) = 0;

    //@}

    //! @name Methods implementing Operator
    //@{

    //! Computes the sparse matrix-multivector multiplication.
    virtual void apply(const MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &X, MultiVector< Scalar, LocalOrdinal, GlobalOrdinal, Node > &Y, Teuchos::ETransp mode=Teuchos::NO_TRANS, Scalar alpha=ScalarTraits< Scalar >::one(), Scalar beta=ScalarTraits< Scalar >::zero()) const = 0;

    //! Returns the Map associated with the domain of this operator. This will be null until fillComplete() is called.
    virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > >  getDomainMap() const = 0;

    //!
    virtual const RCP< const Map< LocalOrdinal, GlobalOrdinal, Node > >  getRangeMap() const = 0;

    //@}

    //! @name Overridden from Teuchos::Describable
    //@{

    //! A simple one-line description of this object.
    virtual std::string description() const = 0;

    //! Print the object with some verbosity level to an FancyOStream object.
    virtual void describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel=Teuchos::Describable::verbLevel_default) const = 0;

    //@}

    //! @name Xpetra-specific routines
    //@{
#ifdef HAVE_XPETRA_KOKKOS_REFACTOR
    typedef typename Kokkos::Details::ArithTraits<Scalar>::val_type impl_scalar_type;
    typedef typename node_type::execution_space execution_space;

    // that is the local_graph_type in Tpetra::CrsGraph...
    typedef Kokkos::StaticCrsGraph<LocalOrdinal,
                                       Kokkos::LayoutLeft,
                                       execution_space> local_graph_type;
    /// \brief The specialization of Kokkos::CrsMatrix that represents
    ///   the part of the sparse matrix on each MPI process.
    ///  The same as for Tpetra
    typedef Kokkos::CrsMatrix<impl_scalar_type, LocalOrdinal, execution_space,void,
                              typename local_graph_type::size_type> local_matrix_type;

    /// \brief Access the underlying local Kokkos::CrsMatrix object
    virtual local_matrix_type getLocalMatrix () const = 0;
#endif

    //@}

    //  Adding these functions by hand, as they're in the skip list.

    //! Returns the number of matrix columns owned on the calling node.
        virtual size_t getNodeNumCols() const = 0;

    //! Extract a list of entries in a specified local row of the matrix. Put into storage allocated by calling routine.
        virtual void getLocalRowCopy(LocalOrdinal LocalRow, const ArrayView< LocalOrdinal > &Indices, const ArrayView< Scalar > &Values, size_t &NumEntries) const = 0;

    //! Does this have an underlying matrix
    virtual bool hasMatrix() const = 0;


  }; // CrsMatrix class

} // Xpetra namespace

#define XPETRA_CRSMATRIX_SHORT
#endif // XPETRA_CRSMATRIX_HPP

APT Browse - Built by Thomas Orozco.