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/************************************************************************/
/* */
/* Copyright 2003 by Christian-Dennis Rahn */
/* and Ullrich Koethe */
/* */
/* This file is part of the VIGRA computer vision library. */
/* The VIGRA Website is */
/* http://hci.iwr.uni-heidelberg.de/vigra/ */
/* Please direct questions, bug reports, and contributions to */
/* ullrich.koethe@iwr.uni-heidelberg.de or */
/* vigra@informatik.uni-hamburg.de */
/* */
/* Permission is hereby granted, free of charge, to any person */
/* obtaining a copy of this software and associated documentation */
/* files (the "Software"), to deal in the Software without */
/* restriction, including without limitation the rights to use, */
/* copy, modify, merge, publish, distribute, sublicense, and/or */
/* sell copies of the Software, and to permit persons to whom the */
/* Software is furnished to do so, subject to the following */
/* conditions: */
/* */
/* The above copyright notice and this permission notice shall be */
/* included in all copies or substantial portions of the */
/* Software. */
/* */
/* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND */
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/************************************************************************/
#ifndef VIGRA_MULTI_CONVOLUTION_H
#define VIGRA_MULTI_CONVOLUTION_H
#include "separableconvolution.hxx"
#include "array_vector.hxx"
#include "multi_array.hxx"
#include "accessor.hxx"
#include "numerictraits.hxx"
#include "navigator.hxx"
#include "metaprogramming.hxx"
#include "multi_pointoperators.hxx"
#include "multi_math.hxx"
#include "functorexpression.hxx"
#include "tinyvector.hxx"
#include "algorithm.hxx"
namespace vigra
{
namespace detail
{
struct DoubleYielder
{
const double value;
DoubleYielder(double v, unsigned, const char *const) : value(v) {}
DoubleYielder(double v) : value(v) {}
void operator++() {}
double operator*() const { return value; }
};
template <typename X>
struct IteratorDoubleYielder
{
X it;
IteratorDoubleYielder(X i, unsigned, const char *const) : it(i) {}
IteratorDoubleYielder(X i) : it(i) {}
void operator++() { ++it; }
double operator*() const { return *it; }
};
template <typename X>
struct SequenceDoubleYielder
{
typename X::const_iterator it;
SequenceDoubleYielder(const X & seq, unsigned dim,
const char *const function_name = "SequenceDoubleYielder")
: it(seq.begin())
{
if (seq.size() == dim)
return;
std::string msg = "(): Parameter number be equal to the number of spatial dimensions.";
vigra_precondition(false, function_name + msg);
}
void operator++() { ++it; }
double operator*() const { return *it; }
};
template <typename X>
struct WrapDoubleIterator
{
typedef
typename IfBool< IsConvertibleTo<X, double>::value,
DoubleYielder,
typename IfBool< IsIterator<X>::value || IsArray<X>::value,
IteratorDoubleYielder<X>,
SequenceDoubleYielder<X>
>::type
>::type type;
};
template <class Param1, class Param2, class Param3>
struct WrapDoubleIteratorTriple
{
typename WrapDoubleIterator<Param1>::type sigma_eff_it;
typename WrapDoubleIterator<Param2>::type sigma_d_it;
typename WrapDoubleIterator<Param3>::type step_size_it;
WrapDoubleIteratorTriple(Param1 sigma_eff, Param2 sigma_d, Param3 step_size)
: sigma_eff_it(sigma_eff), sigma_d_it(sigma_d), step_size_it(step_size) {}
void operator++()
{
++sigma_eff_it;
++sigma_d_it;
++step_size_it;
}
double sigma_eff() const { return *sigma_eff_it; }
double sigma_d() const { return *sigma_d_it; }
double step_size() const { return *step_size_it; }
static void sigma_precondition(double sigma, const char *const function_name)
{
if (sigma < 0.0)
{
std::string msg = "(): Scale must be positive.";
vigra_precondition(false, function_name + msg);
}
}
double sigma_scaled(const char *const function_name = "unknown function ") const
{
sigma_precondition(sigma_eff(), function_name);
sigma_precondition(sigma_d(), function_name);
double sigma_squared = sq(sigma_eff()) - sq(sigma_d());
if (sigma_squared > 0.0)
{
return std::sqrt(sigma_squared) / step_size();
}
else
{
std::string msg = "(): Scale would be imaginary or zero.";
vigra_precondition(false, function_name + msg);
return 0;
}
}
};
template <unsigned dim>
struct multiArrayScaleParam
{
typedef TinyVector<double, dim> p_vector;
typedef typename p_vector::const_iterator return_type;
p_vector vec;
template <class Param>
multiArrayScaleParam(Param val, const char *const function_name = "multiArrayScaleParam")
{
typename WrapDoubleIterator<Param>::type in(val, dim, function_name);
for (unsigned i = 0; i != dim; ++i, ++in)
vec[i] = *in;
}
return_type operator()() const
{
return vec.begin();
}
static void precondition(unsigned n_par, const char *const function_name = "multiArrayScaleParam")
{
char n[3] = "0.";
n[0] += dim;
std::string msg = "(): dimension parameter must be ";
vigra_precondition(dim == n_par, function_name + msg + n);
}
multiArrayScaleParam(double v0, double v1, const char *const function_name = "multiArrayScaleParam")
{
precondition(2, function_name);
vec = p_vector(v0, v1);
}
multiArrayScaleParam(double v0, double v1, double v2, const char *const function_name = "multiArrayScaleParam")
{
precondition(3, function_name);
vec = p_vector(v0, v1, v2);
}
multiArrayScaleParam(double v0, double v1, double v2, double v3, const char *const function_name = "multiArrayScaleParam")
{
precondition(4, function_name);
vec = p_vector(v0, v1, v2, v3);
}
multiArrayScaleParam(double v0, double v1, double v2, double v3, double v4, const char *const function_name = "multiArrayScaleParam")
{
precondition(5, function_name);
vec = p_vector(v0, v1, v2, v3, v4);
}
};
} // namespace detail
#define VIGRA_CONVOLUTION_OPTIONS(function_name, default_value, member_name) \
template <class Param> \
ConvolutionOptions & function_name(const Param & val) \
{ \
member_name = ParamVec(val, "ConvolutionOptions::" #function_name); \
return *this; \
} \
ConvolutionOptions & function_name() \
{ \
member_name = ParamVec(default_value, "ConvolutionOptions::" #function_name); \
return *this; \
} \
ConvolutionOptions & function_name(double v0, double v1) \
{ \
member_name = ParamVec(v0, v1, "ConvolutionOptions::" #function_name); \
return *this; \
} \
ConvolutionOptions & function_name(double v0, double v1, double v2) \
{ \
member_name = ParamVec(v0, v1, v2, "ConvolutionOptions::" #function_name); \
return *this; \
} \
ConvolutionOptions & function_name(double v0, double v1, double v2, double v3) \
{ \
member_name = ParamVec(v0, v1, v2, v3, "ConvolutionOptions::" #function_name); \
return *this; \
} \
ConvolutionOptions & function_name(double v0, double v1, double v2, double v3, double v4) \
{ \
member_name = ParamVec(v0, v1, v2, v3, v4, "ConvolutionOptions::" #function_name); \
return *this; \
}
/** \brief Options class template for convolutions.
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
This class enables the calculation of scale space convolutions
such as \ref gaussianGradientMultiArray() on data with anisotropic
discretization. For these, the result of the ordinary calculation
has to be multiplied by factors of \f$1/w^{n}\f$ for each dimension,
where \f$w\f$ is the step size of the grid in said dimension and
\f$n\f$ is the differential order of the convolution, e.g., 1 for
gaussianGradientMultiArray(), and 0 for gaussianSmoothMultiArray(),
respectively. Also for each dimension in turn, the convolution's scale
parameter \f$\sigma\f$ has to be replaced by
\f$\sqrt{\sigma_\mathrm{eff}^2 - \sigma_\mathrm{D}^2}\Big/w\f$,
where \f$\sigma_\mathrm{eff}\f$ is the resulting effective filtering
scale. The data is assumed to be already filtered by a
gaussian smoothing with the scale parameter \f$\sigma_\mathrm{D}\f$
(such as by measuring equipment). All of the above changes are
automatically employed by the convolution functions for <tt>MultiArray</tt>s
if a corresponding options object is provided.
The <tt>ConvolutionOptions</tt> class must be parameterized by the dimension
<tt>dim</tt>
of the <tt>MultiArray</tt>s on which it is used. The actual per-axis
options are set by (overloaded) member functions explained below,
or else default to neutral values corresponding to the absence of the
particular option.
All member functions set <tt>dim</tt> values of the respective convolution
option, one for each dimension. They may be set explicitly by multiple
arguments for up to five dimensions, or by a single argument to the same
value for all dimensions. For the general case, a single argument that is
either a C-syle array, an iterator, or a C++ standard library style
sequence (such as <tt>std::vector</tt>, with member functions <tt>begin()</tt>
and <tt>size()</tt>) supplies the option values for any number of dimensions.
Note that the return value of all member functions is <tt>*this</tt>, which
provides the mechanism for concatenating member function calls as shown below.
<b>usage with explicit parameters:</b>
\code
ConvolutionOptions<2> opt = ConvolutionOptions<2>().stepSize(1, 2.3);
\endcode
<b>usage with arrays:</b>
\code
const double step_size[3] = { x_scale, y_scale, z_scale };
ConvolutionOptions<3> opt = ConvolutionOptions<3>().stepSize(step_size);
\endcode
<b>usage with C++ standard library style sequences:</b>
\code
TinyVector<double, 4> step_size(1, 1, 2.0, 1.5);
TinyVector<double, 4> r_sigmas(1, 1, 2.3, 3.2);
ConvolutionOptions<4> opt = ConvolutionOptions<4>().stepSize(step_size).resolutionStdDev(r_sigmas);
\endcode
<b>usage with iterators:</b>
\code
ArrayVector<double> step_size;
step_size.push_back(0);
step_size.push_back(3);
step_size.push_back(4);
ArrayVector<double>::iterator i = step_size.begin();
++i;
ConvolutionOptions<2> opt = ConvolutionOptions<2>().stepSize(i);
\endcode
<b>general usage in a convolution function call:</b>
\code
MultiArray<3, double> test_image;
MultiArray<3, double> out_image;
double scale = 5.0;
gaussianSmoothMultiArray(test_image, out_image, scale,
ConvolutionOptions<3>()
.stepSize (1, 1, 3.2)
.resolutionStdDev(1, 1, 4)
);
\endcode
*/
template <unsigned dim>
class ConvolutionOptions
{
public:
typedef typename MultiArrayShape<dim>::type Shape;
typedef detail::multiArrayScaleParam<dim> ParamVec;
typedef typename ParamVec::return_type ParamIt;
ParamVec sigma_eff;
ParamVec sigma_d;
ParamVec step_size;
ParamVec outer_scale;
double window_ratio;
Shape from_point, to_point;
ConvolutionOptions()
: sigma_eff(0.0),
sigma_d(0.0),
step_size(1.0),
outer_scale(0.0),
window_ratio(0.0)
{}
typedef typename detail::WrapDoubleIteratorTriple<ParamIt, ParamIt, ParamIt>
ScaleIterator;
typedef typename detail::WrapDoubleIterator<ParamIt>::type
StepIterator;
ScaleIterator scaleParams() const
{
return ScaleIterator(sigma_eff(), sigma_d(), step_size());
}
StepIterator stepParams() const
{
return StepIterator(step_size());
}
ConvolutionOptions outerOptions() const
{
ConvolutionOptions outer = *this;
// backward-compatible values:
return outer.stdDev(outer_scale()).resolutionStdDev(0.0);
}
// Step size per axis.
// Default: dim values of 1.0
VIGRA_CONVOLUTION_OPTIONS(stepSize, 1.0, step_size)
#ifdef DOXYGEN
/** Step size(s) per axis, i.e., the distance between two
adjacent pixels. Required for <tt>MultiArray</tt>
containing anisotropic data.
Note that a convolution containing a derivative operator
of order <tt>n</tt> results in a multiplication by
\f${\rm stepSize}^{-n}\f$ for each axis.
Also, the above standard deviations
are scaled according to the step size of each axis.
Default value for the options object if this member function is not
used: A value of 1.0 for each dimension.
*/
ConvolutionOptions<dim> & stepSize(...);
#endif
// Resolution standard deviation per axis.
// Default: dim values of 0.0
VIGRA_CONVOLUTION_OPTIONS(resolutionStdDev, 0.0, sigma_d)
#ifdef DOXYGEN
/** Resolution standard deviation(s) per axis, i.e., a supposed
pre-existing gaussian filtering by this value.
The standard deviation actually used by the convolution operators
is \f$\sqrt{{\rm sigma}^{2} - {\rm resolutionStdDev}^{2}}\f$ for each
axis.
Default value for the options object if this member function is not
used: A value of 0.0 for each dimension.
*/
ConvolutionOptions<dim> & resolutionStdDev(...);
#endif
// Standard deviation of scale space operators.
// Default: dim values of 0.0
VIGRA_CONVOLUTION_OPTIONS(stdDev, 0.0, sigma_eff)
VIGRA_CONVOLUTION_OPTIONS(innerScale, 0.0, sigma_eff)
#ifdef DOXYGEN
/** Standard deviation(s) of scale space operators, or inner scale(s) for \ref structureTensorMultiArray().
Usually not
needed, since a single value for all axes may be specified as a parameter
<tt>sigma</tt> to the call of
an convolution operator such as \ref gaussianGradientMultiArray(), and
anisotropic data requiring the use of the stepSize() member function.
Default value for the options object if this member function is not
used: A value of 0.0 for each dimension.
*/
ConvolutionOptions<dim> & stdDev(...);
/** Standard deviation(s) of scale space operators, or inner scale(s) for \ref structureTensorMultiArray().
Usually not
needed, since a single value for all axes may be specified as a parameter
<tt>sigma</tt> to the call of
an convolution operator such as \ref gaussianGradientMultiArray(), and
anisotropic data requiring the use of the stepSize() member function.
Default value for the options object if this member function is not
used: A value of 0.0 for each dimension.
*/
ConvolutionOptions<dim> & innerScale(...);
#endif
// Outer scale, for structure tensor.
// Default: dim values of 0.0
VIGRA_CONVOLUTION_OPTIONS(outerScale, 0.0, outer_scale)
#ifdef DOXYGEN
/** Standard deviation(s) of the second convolution of the
structure tensor.
Usually not needed, since a single value for
all axes may be specified as a parameter <tt>outerScale</tt> to
the call of \ref structureTensorMultiArray(), and
anisotropic data requiring the use of the stepSize() member
function.
Default value for the options object if this member function is not
used: A value of 0.0 for each dimension.
*/
ConvolutionOptions<dim> & outerScale(...);
#endif
/** Size of the filter window as a multiple of the scale parameter.
This option is only used for Gaussian filters and their derivatives.
By default, the window size of a Gaussian filter is automatically
determined such that the error resulting from restricting the
infinitely large Gaussian function to a finite size is minimized.
In particular, the window radius is determined as
<tt>radius = round(3.0 * sigma + 0.5 * order)</tt>, where 'order' is the
desired derivative order. In some cases, it is desirable to trade off
accuracy for speed, and this function can be used to request a smaller
window radius.
Default: <tt>0.0</tt> (i.e. determine the window size automatically)
*/
ConvolutionOptions<dim> & filterWindowSize(double ratio)
{
vigra_precondition(ratio >= 0.0,
"ConvolutionOptions::filterWindowSize(): ratio must not be negative.");
window_ratio = ratio;
return *this;
}
/** Restrict the filter to a subregion of the input array.
This is useful for speeding up computations by ignoring irrelevant
areas in the array. <b>Note:</b> It is assumed that the output array
of the convolution has the size given in this function. Negative ROI
boundaries are interpreted relative to the end of the respective dimension
(i.e. <tt>if(to[k] < 0) to[k] += source.shape(k);</tt>).
Default: <tt>from = Shape(), to = Shape()</tt> (i.e. use entire array)
*/
ConvolutionOptions<dim> & subarray(Shape const & from, Shape const & to)
{
from_point = from;
to_point = to;
return *this;
}
};
namespace detail
{
/********************************************************/
/* */
/* internalSeparableConvolveMultiArray */
/* */
/********************************************************/
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class KernelIterator>
void
internalSeparableConvolveMultiArrayTmp(
SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest, KernelIterator kit)
{
enum { N = 1 + SrcIterator::level };
typedef typename NumericTraits<typename DestAccessor::value_type>::RealPromote TmpType;
typedef typename AccessorTraits<TmpType>::default_accessor TmpAcessor;
// temporary array to hold the current line to enable in-place operation
ArrayVector<TmpType> tmp( shape[0] );
typedef MultiArrayNavigator<SrcIterator, N> SNavigator;
typedef MultiArrayNavigator<DestIterator, N> DNavigator;
TmpAcessor acc;
{
// only operate on first dimension here
SNavigator snav( si, shape, 0 );
DNavigator dnav( di, shape, 0 );
for( ; snav.hasMore(); snav++, dnav++ )
{
// first copy source to tmp for maximum cache efficiency
copyLine(snav.begin(), snav.end(), src, tmp.begin(), acc);
convolveLine(srcIterRange(tmp.begin(), tmp.end(), acc),
destIter( dnav.begin(), dest ),
kernel1d( *kit ) );
}
++kit;
}
// operate on further dimensions
for( int d = 1; d < N; ++d, ++kit )
{
DNavigator dnav( di, shape, d );
tmp.resize( shape[d] );
for( ; dnav.hasMore(); dnav++ )
{
// first copy source to tmp since convolveLine() cannot work in-place
copyLine(dnav.begin(), dnav.end(), dest, tmp.begin(), acc);
convolveLine(srcIterRange(tmp.begin(), tmp.end(), acc),
destIter( dnav.begin(), dest ),
kernel1d( *kit ) );
}
}
}
/********************************************************/
/* */
/* internalSeparableConvolveSubarray */
/* */
/********************************************************/
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class KernelIterator>
void
internalSeparableConvolveSubarray(
SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest, KernelIterator kit,
SrcShape const & start, SrcShape const & stop)
{
enum { N = 1 + SrcIterator::level };
typedef typename NumericTraits<typename DestAccessor::value_type>::RealPromote TmpType;
typedef MultiArray<N, TmpType> TmpArray;
typedef typename TmpArray::traverser TmpIterator;
typedef typename AccessorTraits<TmpType>::default_accessor TmpAcessor;
SrcShape sstart, sstop, axisorder, tmpshape;
TinyVector<double, N> overhead;
for(int k=0; k<N; ++k)
{
sstart[k] = start[k] - kit[k].right();
if(sstart[k] < 0)
sstart[k] = 0;
sstop[k] = stop[k] - kit[k].left();
if(sstop[k] > shape[k])
sstop[k] = shape[k];
overhead[k] = double(sstop[k] - sstart[k]) / (stop[k] - start[k]);
}
indexSort(overhead.begin(), overhead.end(), axisorder.begin(), std::greater<double>());
SrcShape dstart, dstop(sstop - sstart);
dstop[axisorder[0]] = stop[axisorder[0]] - start[axisorder[0]];
// temporary array to hold the current line to enable in-place operation
MultiArray<N, TmpType> tmp(dstop);
typedef MultiArrayNavigator<SrcIterator, N> SNavigator;
typedef MultiArrayNavigator<TmpIterator, N> TNavigator;
TmpAcessor acc;
{
// only operate on first dimension here
SNavigator snav( si, sstart, sstop, axisorder[0]);
TNavigator tnav( tmp.traverser_begin(), dstart, dstop, axisorder[0]);
ArrayVector<TmpType> tmpline(sstop[axisorder[0]] - sstart[axisorder[0]]);
int lstart = start[axisorder[0]] - sstart[axisorder[0]];
int lstop = lstart + (stop[axisorder[0]] - start[axisorder[0]]);
for( ; snav.hasMore(); snav++, tnav++ )
{
// first copy source to tmp for maximum cache efficiency
copyLine(snav.begin(), snav.end(), src, tmpline.begin(), acc);
convolveLine(srcIterRange(tmpline.begin(), tmpline.end(), acc),
destIter(tnav.begin(), acc),
kernel1d( kit[axisorder[0]] ), lstart, lstop);
}
}
// operate on further dimensions
for( int d = 1; d < N; ++d)
{
TNavigator tnav( tmp.traverser_begin(), dstart, dstop, axisorder[d]);
ArrayVector<TmpType> tmpline(dstop[axisorder[d]] - dstart[axisorder[d]]);
int lstart = start[axisorder[d]] - sstart[axisorder[d]];
int lstop = lstart + (stop[axisorder[d]] - start[axisorder[d]]);
for( ; tnav.hasMore(); tnav++ )
{
// first copy source to tmp because convolveLine() cannot work in-place
copyLine(tnav.begin(), tnav.end(), acc, tmpline.begin(), acc );
convolveLine(srcIterRange(tmpline.begin(), tmpline.end(), acc),
destIter( tnav.begin() + lstart, acc ),
kernel1d( kit[axisorder[d]] ), lstart, lstop);
}
dstart[axisorder[d]] = lstart;
dstop[axisorder[d]] = lstop;
}
copyMultiArray(tmp.traverser_begin()+dstart, stop-start, acc, di, dest);
}
template <class K>
void
scaleKernel(K & kernel, double a)
{
for(int i = kernel.left(); i <= kernel.right(); ++i)
kernel[i] = detail::RequiresExplicitCast<typename K::value_type>::cast(kernel[i] * a);
}
} // namespace detail
/** \addtogroup MultiArrayConvolutionFilters Convolution filters for multi-dimensional arrays.
These functions realize a separable convolution on an arbitrary dimensional
array that is specified by iterators (compatible to \ref MultiIteratorPage)
and shape objects. It can therefore be applied to a wide range of data structures
(\ref vigra::MultiArrayView, \ref vigra::MultiArray etc.).
*/
//@{
/********************************************************/
/* */
/* separableConvolveMultiArray */
/* */
/********************************************************/
/** \brief Separated convolution on multi-dimensional arrays.
This function computes a separated convolution on all dimensions
of the given multi-dimensional array. Both source and destination
arrays are represented by iterators, shape objects and accessors.
The destination array is required to already have the correct size.
There are two variants of this functions: one takes a single kernel
of type \ref vigra::Kernel1D which is then applied to all dimensions,
whereas the other requires an iterator referencing a sequence of
\ref vigra::Kernel1D objects, one for every dimension of the data.
Then the first kernel in this sequence is applied to the innermost
dimension (e.g. the x-axis of an image), while the last is applied to the
outermost dimension (e.g. the z-axis in a 3D image).
This function may work in-place, which means that <tt>source.data() == dest.data()</tt> is allowed.
A full-sized internal array is only allocated if working on the destination
array directly would cause round-off errors (i.e. if
<tt>typeid(typename NumericTraits<T2>::RealPromote) != typeid(T2)</tt>).
If <tt>start</tt> and <tt>stop</tt> have non-default values, they must represent
a valid subarray of the input array. The convolution is then restricted to that
subarray, and it is assumed that the output array only refers to the
subarray (i.e. <tt>dest.shape() == stop - start</tt>). Negative ROI boundaries are
interpreted relative to the end of the respective dimension
(i.e. <tt>if(stop[k] < 0) stop[k] += source.shape(k);</tt>).
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// apply each kernel from the sequence 'kernels' in turn
template <unsigned int N, class T1, class S1,
class T2, class S2,
class KernelIterator>
void
separableConvolveMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
KernelIterator kernels,
typename MultiArrayShape<N>::type start = typename MultiArrayShape<N>::type(),
typename MultiArrayShape<N>::type stop = typename MultiArrayShape<N>::type());
// apply the same kernel to all dimensions
template <unsigned int N, class T1, class S1,
class T2, class S2,
class T>
void
separableConvolveMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
Kernel1D<T> const & kernel,
typename MultiArrayShape<N>::type const & start = typename MultiArrayShape<N>::type(),
typename MultiArrayShape<N>::type const & stop = typename MultiArrayShape<N>::type());
}
\endcode
\deprecatedAPI{separableConvolveMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
// apply the same kernel to all dimensions
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
void
separableConvolveMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape());
// apply each kernel from the sequence 'kernels' in turn
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class KernelIterator>
void
separableConvolveMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
KernelIterator kernels,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
// apply the same kernel to all dimensions
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
void
separableConvolveMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape());
// apply each kernel from the sequence 'kernels' in turn
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class KernelIterator>
void
separableConvolveMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
KernelIterator kernels,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, float> dest(shape);
...
Kernel1D<float> gauss;
gauss.initGaussian(sigma);
// smooth all dimensions with the same kernel
separableConvolveMultiArray(source, dest, gauss);
// create 3 Gauss kernels, one for each dimension, but smooth the z-axis less
ArrayVector<Kernel1D<float> > kernels(3, gauss);
kernels[2].initGaussian(sigma / 2.0);
// perform Gaussian smoothing on all dimensions
separableConvolveMultiArray(source, dest, kernels.begin());
// create output array for a ROI
MultiArray<3, float> destROI(shape - Shape3(10,10,10));
// only smooth the given ROI (ignore 5 pixels on all sides of the array)
separableConvolveMultiArray(source, destROI, gauss, Shape3(5,5,5), Shape3(-5,-5,-5));
\endcode
\deprecatedUsage{separableConvolveMultiArray}
\code
MultiArray<3, unsigned char>::size_type shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, float> dest(shape);
...
Kernel1D<float> gauss;
gauss.initGaussian(sigma);
// create 3 Gauss kernels, one for each dimension
ArrayVector<Kernel1D<float> > kernels(3, gauss);
// perform Gaussian smoothing on all dimensions
separableConvolveMultiArray(source, dest,
kernels.begin());
\endcode
<b> Required Interface:</b>
\code
see \ref separableConvolveImage(), in addition:
NumericTraits<T1>::RealPromote s = src[0];
s = s + s;
s = kernel(0) * s;
\endcode
\deprecatedEnd
\see vigra::Kernel1D, convolveLine()
*/
doxygen_overloaded_function(template <...> void separableConvolveMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class KernelIterator>
void
separableConvolveMultiArray( SrcIterator s, SrcShape const & shape, SrcAccessor src,
DestIterator d, DestAccessor dest,
KernelIterator kernels,
SrcShape start = SrcShape(),
SrcShape stop = SrcShape())
{
typedef typename NumericTraits<typename DestAccessor::value_type>::RealPromote TmpType;
if(stop != SrcShape())
{
enum { N = 1 + SrcIterator::level };
detail::RelativeToAbsoluteCoordinate<N-1>::exec(shape, start);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(shape, stop);
for(int k=0; k<N; ++k)
vigra_precondition(0 <= start[k] && start[k] < stop[k] && stop[k] <= shape[k],
"separableConvolveMultiArray(): invalid subarray shape.");
detail::internalSeparableConvolveSubarray(s, shape, src, d, dest, kernels, start, stop);
}
else if(!IsSameType<TmpType, typename DestAccessor::value_type>::boolResult)
{
// need a temporary array to avoid rounding errors
MultiArray<SrcShape::static_size, TmpType> tmpArray(shape);
detail::internalSeparableConvolveMultiArrayTmp( s, shape, src,
tmpArray.traverser_begin(), typename AccessorTraits<TmpType>::default_accessor(), kernels );
copyMultiArray(srcMultiArrayRange(tmpArray), destIter(d, dest));
}
else
{
// work directly on the destination array
detail::internalSeparableConvolveMultiArrayTmp( s, shape, src, d, dest, kernels );
}
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
inline void
separableConvolveMultiArray( SrcIterator s, SrcShape const & shape, SrcAccessor src,
DestIterator d, DestAccessor dest,
Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape())
{
ArrayVector<Kernel1D<T> > kernels(shape.size(), kernel);
separableConvolveMultiArray( s, shape, src, d, dest, kernels.begin(), start, stop);
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class KernelIterator>
inline void
separableConvolveMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
KernelIterator kit,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape())
{
separableConvolveMultiArray( source.first, source.second, source.third,
dest.first, dest.second, kit, start, stop );
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
inline void
separableConvolveMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape())
{
ArrayVector<Kernel1D<T> > kernels(source.second.size(), kernel);
separableConvolveMultiArray( source.first, source.second, source.third,
dest.first, dest.second, kernels.begin(), start, stop);
}
template <unsigned int N, class T1, class S1,
class T2, class S2,
class KernelIterator>
inline void
separableConvolveMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
KernelIterator kit,
typename MultiArrayShape<N>::type start = typename MultiArrayShape<N>::type(),
typename MultiArrayShape<N>::type stop = typename MultiArrayShape<N>::type())
{
if(stop != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), start);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), stop);
vigra_precondition(dest.shape() == (stop - start),
"separableConvolveMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"separableConvolveMultiArray(): shape mismatch between input and output.");
}
separableConvolveMultiArray( srcMultiArrayRange(source),
destMultiArray(dest), kit, start, stop );
}
template <unsigned int N, class T1, class S1,
class T2, class S2,
class T>
inline void
separableConvolveMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
Kernel1D<T> const & kernel,
typename MultiArrayShape<N>::type const & start = typename MultiArrayShape<N>::type(),
typename MultiArrayShape<N>::type const & stop = typename MultiArrayShape<N>::type())
{
ArrayVector<Kernel1D<T> > kernels(N, kernel);
separableConvolveMultiArray(source, dest, kernels.begin(), start, stop);
}
/********************************************************/
/* */
/* convolveMultiArrayOneDimension */
/* */
/********************************************************/
/** \brief Convolution along a single dimension of a multi-dimensional arrays.
This function computes a convolution along one dimension (specified by
the parameter <tt>dim</tt> of the given multi-dimensional array with the given
<tt>kernel</tt>. The destination array must already have the correct size.
If <tt>start</tt> and <tt>stop</tt> have non-default values, they must represent
a valid subarray of the input array. The convolution is then restricted to that
subarray, and it is assumed that the output array only refers to the
subarray (i.e. <tt>dest.shape() == stop - start</tt>). Negative ROI boundaries are
interpreted relative to the end of the respective dimension
(i.e. <tt>if(stop[k] < 0) stop[k] += source.shape(k);</tt>).
This function may work in-place, which means that <tt>source.data() == dest.data()</tt> is allowed.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
template <unsigned int N, class T1, class S1,
class T2, class S2,
class T>
void
convolveMultiArrayOneDimension(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
unsigned int dim,
Kernel1D<T> const & kernel,
typename MultiArrayShape<N>::type start = typename MultiArrayShape<N>::type(),
typename MultiArrayShape<N>::type stop = typename MultiArrayShape<N>::type());
}
\endcode
\deprecatedAPI{convolveMultiArrayOneDimension}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
void
convolveMultiArrayOneDimension(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
unsigned int dim, vigra::Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
void
convolveMultiArrayOneDimension(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
unsigned int dim, vigra::Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, float> dest(shape);
...
Kernel1D<float> gauss;
gauss.initGaussian(sigma);
// perform Gaussian smoothing along dimension 1 (height)
convolveMultiArrayOneDimension(source, dest, 1, gauss);
\endcode
\see separableConvolveMultiArray()
*/
doxygen_overloaded_function(template <...> void convolveMultiArrayOneDimension)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
void
convolveMultiArrayOneDimension(SrcIterator s, SrcShape const & shape, SrcAccessor src,
DestIterator d, DestAccessor dest,
unsigned int dim, vigra::Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape())
{
enum { N = 1 + SrcIterator::level };
vigra_precondition( dim < N,
"convolveMultiArrayOneDimension(): The dimension number to convolve must be smaller "
"than the data dimensionality" );
typedef typename NumericTraits<typename DestAccessor::value_type>::RealPromote TmpType;
typedef typename AccessorTraits<TmpType>::default_const_accessor TmpAccessor;
ArrayVector<TmpType> tmp( shape[dim] );
typedef MultiArrayNavigator<SrcIterator, N> SNavigator;
typedef MultiArrayNavigator<DestIterator, N> DNavigator;
SrcShape sstart, sstop(shape), dstart, dstop(shape);
if(stop != SrcShape())
{
sstart = start;
sstop = stop;
sstart[dim] = 0;
sstop[dim] = shape[dim];
dstop = stop - start;
}
SNavigator snav( s, sstart, sstop, dim );
DNavigator dnav( d, dstart, dstop, dim );
for( ; snav.hasMore(); snav++, dnav++ )
{
// first copy source to temp for maximum cache efficiency
copyLine(snav.begin(), snav.end(), src,
tmp.begin(), typename AccessorTraits<TmpType>::default_accessor() );
convolveLine(srcIterRange( tmp.begin(), tmp.end(), TmpAccessor()),
destIter( dnav.begin(), dest ),
kernel1d( kernel), start[dim], stop[dim]);
}
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor, class T>
inline void
convolveMultiArrayOneDimension(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
unsigned int dim,
Kernel1D<T> const & kernel,
SrcShape const & start = SrcShape(),
SrcShape const & stop = SrcShape())
{
convolveMultiArrayOneDimension(source.first, source.second, source.third,
dest.first, dest.second, dim, kernel, start, stop);
}
template <unsigned int N, class T1, class S1,
class T2, class S2,
class T>
inline void
convolveMultiArrayOneDimension(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
unsigned int dim,
Kernel1D<T> const & kernel,
typename MultiArrayShape<N>::type start = typename MultiArrayShape<N>::type(),
typename MultiArrayShape<N>::type stop = typename MultiArrayShape<N>::type())
{
if(stop != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), start);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), stop);
vigra_precondition(dest.shape() == (stop - start),
"convolveMultiArrayOneDimension(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"convolveMultiArrayOneDimension(): shape mismatch between input and output.");
}
convolveMultiArrayOneDimension(srcMultiArrayRange(source),
destMultiArray(dest), dim, kernel, start, stop);
}
/********************************************************/
/* */
/* gaussianSmoothMultiArray */
/* */
/********************************************************/
/** \brief Isotropic Gaussian smoothing of a multi-dimensional arrays.
This function computes an isotropic convolution of the given N-dimensional
array with a Gaussian filter at the given standard deviation <tt>sigma</tt>.
Both source and destination arrays are represented by
iterators, shape objects and accessors. The destination array is required to
already have the correct size. This function may work in-place, which means
that <tt>source.data() == dest.data()</tt> is allowed. It is implemented by a call to
\ref separableConvolveMultiArray() with the appropriate kernel.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is otherwise optional
unless the parameter <tt>sigma</tt> is omitted.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// pass filter scale explicitly
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianSmoothMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
// pass filer scale(s) in the option object
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianSmoothMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> opt);
}
\endcode
\deprecatedAPI{gaussianSmoothMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianSmoothMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianSmoothMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, float> dest(shape);
...
// perform isotropic Gaussian smoothing at scale 'sigma'
gaussianSmoothMultiArray(source, dest, sigma);
\endcode
<b> Usage with anisotropic data:</b>
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, float> dest(shape);
TinyVector<float, 3> step_size;
TinyVector<float, 3> resolution_sigmas;
...
// perform anisotropic Gaussian smoothing at scale 'sigma'
gaussianSmoothMultiArray(source, dest, sigma,
ConvolutionOptions<3>().stepSize(step_size).resolutionStdDev(resolution_sigmas));
\endcode
\see separableConvolveMultiArray()
*/
doxygen_overloaded_function(template <...> void gaussianSmoothMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianSmoothMultiArray( SrcIterator s, SrcShape const & shape, SrcAccessor src,
DestIterator d, DestAccessor dest,
const ConvolutionOptions<SrcShape::static_size> & opt,
const char *const function_name = "gaussianSmoothMultiArray" )
{
static const int N = SrcShape::static_size;
typename ConvolutionOptions<N>::ScaleIterator params = opt.scaleParams();
ArrayVector<Kernel1D<double> > kernels(N);
for (int dim = 0; dim < N; ++dim, ++params)
kernels[dim].initGaussian(params.sigma_scaled(function_name), 1.0, opt.window_ratio);
separableConvolveMultiArray(s, shape, src, d, dest, kernels.begin(), opt.from_point, opt.to_point);
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
gaussianSmoothMultiArray( SrcIterator s, SrcShape const & shape, SrcAccessor src,
DestIterator d, DestAccessor dest, double sigma,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
ConvolutionOptions<SrcShape::static_size> par = opt;
gaussianSmoothMultiArray(s, shape, src, d, dest, par.stdDev(sigma));
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
gaussianSmoothMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
const ConvolutionOptions<SrcShape::static_size> & opt)
{
gaussianSmoothMultiArray( source.first, source.second, source.third,
dest.first, dest.second, opt );
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
gaussianSmoothMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest, double sigma,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
gaussianSmoothMultiArray( source.first, source.second, source.third,
dest.first, dest.second, sigma, opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianSmoothMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> opt)
{
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"gaussianSmoothMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"gaussianSmoothMultiArray(): shape mismatch between input and output.");
}
gaussianSmoothMultiArray( srcMultiArrayRange(source),
destMultiArray(dest), opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianSmoothMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
gaussianSmoothMultiArray( source, dest, opt.stdDev(sigma) );
}
/********************************************************/
/* */
/* gaussianGradientMultiArray */
/* */
/********************************************************/
/** \brief Calculate Gaussian gradient of a multi-dimensional arrays.
This function computes the Gaussian gradient of the given N-dimensional
array with a sequence of first-derivative-of-Gaussian filters at the given
standard deviation <tt>sigma</tt> (differentiation is applied to each dimension
in turn, starting with the innermost dimension). The destination array is
required to have a vector valued pixel type with as many elements as the number of
dimensions. This function is implemented by calls to
\ref separableConvolveMultiArray() with the appropriate kernels.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is otherwise optional
unless the parameter <tt>sigma</tt> is omitted.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// pass filter scale explicitly
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianGradientMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, N>, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
// pass filter scale(s) in option object
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianGradientMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, N>, S2> dest,
ConvolutionOptions<N> opt);
}
\endcode
\deprecatedAPI{gaussianGradientMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianGradientMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianGradientMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, TinyVector<float, 3> > dest(shape);
...
// compute Gaussian gradient at scale sigma
gaussianGradientMultiArray(source, dest, sigma);
\endcode
<b> Usage with anisotropic data:</b>
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, TinyVector<float, 3> > dest(shape);
TinyVector<float, 3> step_size;
TinyVector<float, 3> resolution_sigmas;
...
// compute Gaussian gradient at scale sigma
gaussianGradientMultiArray(source, dest, sigma,
ConvolutionOptions<3>().stepSize(step_size).resolutionStdDev(resolution_sigmas));
\endcode
\see separableConvolveMultiArray()
*/
doxygen_overloaded_function(template <...> void gaussianGradientMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianGradientMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest,
ConvolutionOptions<SrcShape::static_size> const & opt,
const char *const function_name = "gaussianGradientMultiArray")
{
typedef typename DestAccessor::value_type DestType;
typedef typename DestType::value_type DestValueType;
typedef typename NumericTraits<DestValueType>::RealPromote KernelType;
static const int N = SrcShape::static_size;
typedef typename ConvolutionOptions<N>::ScaleIterator ParamType;
for(int k=0; k<N; ++k)
if(shape[k] <=0)
return;
vigra_precondition(N == (int)dest.size(di),
"gaussianGradientMultiArray(): Wrong number of channels in output array.");
ParamType params = opt.scaleParams();
ParamType params2(params);
ArrayVector<Kernel1D<KernelType> > plain_kernels(N);
for (int dim = 0; dim < N; ++dim, ++params)
{
double sigma = params.sigma_scaled(function_name);
plain_kernels[dim].initGaussian(sigma, 1.0, opt.window_ratio);
}
typedef VectorElementAccessor<DestAccessor> ElementAccessor;
// compute gradient components
for (int dim = 0; dim < N; ++dim, ++params2)
{
ArrayVector<Kernel1D<KernelType> > kernels(plain_kernels);
kernels[dim].initGaussianDerivative(params2.sigma_scaled(), 1, 1.0, opt.window_ratio);
detail::scaleKernel(kernels[dim], 1.0 / params2.step_size());
separableConvolveMultiArray(si, shape, src, di, ElementAccessor(dim, dest), kernels.begin(),
opt.from_point, opt.to_point);
}
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
gaussianGradientMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest, double sigma,
ConvolutionOptions<SrcShape::static_size> opt = ConvolutionOptions<SrcShape::static_size>())
{
gaussianGradientMultiArray(si, shape, src, di, dest, opt.stdDev(sigma));
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
gaussianGradientMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
ConvolutionOptions<SrcShape::static_size> const & opt )
{
gaussianGradientMultiArray( source.first, source.second, source.third,
dest.first, dest.second, opt );
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
gaussianGradientMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
gaussianGradientMultiArray( source.first, source.second, source.third,
dest.first, dest.second, sigma, opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianGradientMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, N>, S2> dest,
ConvolutionOptions<N> opt )
{
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"gaussianGradientMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"gaussianGradientMultiArray(): shape mismatch between input and output.");
}
gaussianGradientMultiArray( srcMultiArrayRange(source),
destMultiArray(dest), opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianGradientMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, N>, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
gaussianGradientMultiArray( source, dest, opt.stdDev(sigma) );
}
/********************************************************/
/* */
/* gaussianGradientMagnitude */
/* */
/********************************************************/
namespace detail {
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianGradientMagnitudeImpl(MultiArrayView<N+1, T1, S1> const & src,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
typename MultiArrayShape<N>::type shape(src.shape().template subarray<0,N>());
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(shape, opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(shape, opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"gaussianGradientMagnitude(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(shape == dest.shape(),
"gaussianGradientMagnitude(): shape mismatch between input and output.");
}
dest.init(0.0);
typedef typename NumericTraits<T1>::RealPromote TmpType;
MultiArray<N, TinyVector<TmpType, N> > grad(dest.shape());
using namespace multi_math;
for(int k=0; k<src.shape(N); ++k)
{
gaussianGradientMultiArray(src.bindOuter(k), grad, opt);
dest += squaredNorm(grad);
}
dest = sqrt(dest);
}
} // namespace detail
// documentation is in convolution.hxx
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianGradientMagnitude(MultiArrayView<N+1, Multiband<T1>, S1> const & src,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> const & opt)
{
detail::gaussianGradientMagnitudeImpl<N, T1>(src, dest, opt);
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianGradientMagnitude(MultiArrayView<N, T1, S1> const & src,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> const & opt)
{
detail::gaussianGradientMagnitudeImpl<N, T1>(src.insertSingletonDimension(N), dest, opt);
}
template <unsigned int N, class T1, int M, class S1,
class T2, class S2>
inline void
gaussianGradientMagnitude(MultiArrayView<N, TinyVector<T1, M>, S1> const & src,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> const & opt)
{
detail::gaussianGradientMagnitudeImpl<N, T1>(src.expandElements(N), dest, opt);
}
template <unsigned int N, class T1, unsigned int R, unsigned int G, unsigned int B, class S1,
class T2, class S2>
inline void
gaussianGradientMagnitude(MultiArrayView<N, RGBValue<T1, R, G, B>, S1> const & src,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> const & opt)
{
detail::gaussianGradientMagnitudeImpl<N, T1>(src.expandElements(N), dest, opt);
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianGradientMagnitude(MultiArrayView<N, T1, S1> const & src,
MultiArrayView<N, T2, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
gaussianGradientMagnitude(src, dest, opt.stdDev(sigma));
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianGradientMagnitude(MultiArrayView<N+1, Multiband<T1>, S1> const & src,
MultiArrayView<N, T2, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
gaussianGradientMagnitude<N>(src, dest, opt.stdDev(sigma));
}
/********************************************************/
/* */
/* symmetricGradientMultiArray */
/* */
/********************************************************/
/** \brief Calculate gradient of a multi-dimensional arrays using symmetric difference filters.
This function computes the gradient of the given N-dimensional
array with a sequence of symmetric difference filters a (differentiation is applied
to each dimension in turn, starting with the innermost dimension).
The destination array is required to have a vector valued pixel type with as many
elements as the number of dimensions. This function is implemented by calls to
\ref convolveMultiArrayOneDimension() with the symmetric difference kernel.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is optional
otherwise.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
symmetricGradientMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, N>, S2> dest,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
}
\endcode
\deprecatedAPI{symmetricGradientMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
symmetricGradientMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
symmetricGradientMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
MultiArray<3, unsigned char>::size_type shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, TinyVector<float, 3> > dest(shape);
...
// compute gradient
symmetricGradientMultiArray(srcMultiArrayRange(source), destMultiArray(dest));
\endcode
<b> Usage with anisotropic data:</b>
\code
Shape3 shape(width, height, depth);
MultiArray<3, unsigned char> source(shape);
MultiArray<3, TinyVector<float, 3> > dest(shape);
TinyVector<float, 3> step_size;
...
// compute gradient
symmetricGradientMultiArray(source, dest,
ConvolutionOptions<3>().stepSize(step_size));
\endcode
\see convolveMultiArrayOneDimension()
*/
doxygen_overloaded_function(template <...> void symmetricGradientMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
symmetricGradientMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
typedef typename DestAccessor::value_type DestType;
typedef typename DestType::value_type DestValueType;
typedef typename NumericTraits<DestValueType>::RealPromote KernelType;
static const int N = SrcShape::static_size;
typedef typename ConvolutionOptions<N>::StepIterator StepType;
for(int k=0; k<N; ++k)
if(shape[k] <=0)
return;
vigra_precondition(N == (int)dest.size(di),
"symmetricGradientMultiArray(): Wrong number of channels in output array.");
Kernel1D<KernelType> filter;
filter.initSymmetricDifference();
StepType step_size_it = opt.stepParams();
typedef VectorElementAccessor<DestAccessor> ElementAccessor;
// compute gradient components
for (int d = 0; d < N; ++d, ++step_size_it)
{
Kernel1D<KernelType> symmetric(filter);
detail::scaleKernel(symmetric, 1 / *step_size_it);
convolveMultiArrayOneDimension(si, shape, src,
di, ElementAccessor(d, dest),
d, symmetric, opt.from_point, opt.to_point);
}
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
symmetricGradientMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
symmetricGradientMultiArray(source.first, source.second, source.third,
dest.first, dest.second, opt);
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
symmetricGradientMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, N>, S2> dest,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"symmetricGradientMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"symmetricGradientMultiArray(): shape mismatch between input and output.");
}
symmetricGradientMultiArray(srcMultiArrayRange(source),
destMultiArray(dest), opt);
}
/********************************************************/
/* */
/* laplacianOfGaussianMultiArray */
/* */
/********************************************************/
/** \brief Calculate Laplacian of a N-dimensional arrays using Gaussian derivative filters.
This function computes the Laplacian of the given N-dimensional
array with a sequence of second-derivative-of-Gaussian filters at the given
standard deviation <tt>sigma</tt>. Both source and destination
arrays must have scalar value_type. This function is implemented by calls to
\ref separableConvolveMultiArray() with the appropriate kernels, followed by summation.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is otherwise optional
unless the parameter <tt>sigma</tt> is left out.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// pass scale explicitly
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
laplacianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
// pass scale(s) in option object
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
laplacianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> opt );
}
\endcode
\deprecatedAPI{laplacianOfGaussianMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
laplacianOfGaussianMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
laplacianOfGaussianMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, float> source(shape);
MultiArray<3, float> laplacian(shape);
...
// compute Laplacian at scale sigma
laplacianOfGaussianMultiArray(source, laplacian, sigma);
\endcode
<b> Usage with anisotropic data:</b>
\code
MultiArray<3, float> source(shape);
MultiArray<3, float> laplacian(shape);
TinyVector<float, 3> step_size;
TinyVector<float, 3> resolution_sigmas;
...
// compute Laplacian at scale sigma
laplacianOfGaussianMultiArray(source, laplacian, sigma,
ConvolutionOptions<3>().stepSize(step_size).resolutionStdDev(resolution_sigmas));
\endcode
\see separableConvolveMultiArray()
*/
doxygen_overloaded_function(template <...> void laplacianOfGaussianMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
laplacianOfGaussianMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest,
ConvolutionOptions<SrcShape::static_size> const & opt )
{
using namespace functor;
typedef typename DestAccessor::value_type DestType;
typedef typename NumericTraits<DestType>::RealPromote KernelType;
typedef typename AccessorTraits<KernelType>::default_accessor DerivativeAccessor;
static const int N = SrcShape::static_size;
typedef typename ConvolutionOptions<N>::ScaleIterator ParamType;
ParamType params = opt.scaleParams();
ParamType params2(params);
ArrayVector<Kernel1D<KernelType> > plain_kernels(N);
for (int dim = 0; dim < N; ++dim, ++params)
{
double sigma = params.sigma_scaled("laplacianOfGaussianMultiArray");
plain_kernels[dim].initGaussian(sigma, 1.0, opt.window_ratio);
}
SrcShape dshape(shape);
if(opt.to_point != SrcShape())
dshape = opt.to_point - opt.from_point;
MultiArray<N, KernelType> derivative(dshape);
// compute 2nd derivatives and sum them up
for (int dim = 0; dim < N; ++dim, ++params2)
{
ArrayVector<Kernel1D<KernelType> > kernels(plain_kernels);
kernels[dim].initGaussianDerivative(params2.sigma_scaled(), 2, 1.0, opt.window_ratio);
detail::scaleKernel(kernels[dim], 1.0 / sq(params2.step_size()));
if (dim == 0)
{
separableConvolveMultiArray( si, shape, src,
di, dest, kernels.begin(), opt.from_point, opt.to_point);
}
else
{
separableConvolveMultiArray( si, shape, src,
derivative.traverser_begin(), DerivativeAccessor(),
kernels.begin(), opt.from_point, opt.to_point);
combineTwoMultiArrays(di, dshape, dest, derivative.traverser_begin(), DerivativeAccessor(),
di, dest, Arg1() + Arg2() );
}
}
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
laplacianOfGaussianMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest, double sigma,
ConvolutionOptions<SrcShape::static_size> opt = ConvolutionOptions<SrcShape::static_size>())
{
laplacianOfGaussianMultiArray(si, shape, src, di, dest, opt.stdDev(sigma));
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
laplacianOfGaussianMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
ConvolutionOptions<SrcShape::static_size> const & opt )
{
laplacianOfGaussianMultiArray( source.first, source.second, source.third,
dest.first, dest.second, opt );
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
laplacianOfGaussianMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
laplacianOfGaussianMultiArray( source.first, source.second, source.third,
dest.first, dest.second, sigma, opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
laplacianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
ConvolutionOptions<N> opt )
{
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"laplacianOfGaussianMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"laplacianOfGaussianMultiArray(): shape mismatch between input and output.");
}
laplacianOfGaussianMultiArray( srcMultiArrayRange(source),
destMultiArray(dest), opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
laplacianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, T2, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
laplacianOfGaussianMultiArray( source, dest, opt.stdDev(sigma) );
}
/********************************************************/
/* */
/* gaussianDivergenceMultiArray */
/* */
/********************************************************/
/** \brief Calculate the divergence of a vector field using Gaussian derivative filters.
This function computes the divergence of the given N-dimensional vector field
with a sequence of first-derivative-of-Gaussian filters at the given
standard deviation <tt>sigma</tt>. The input vector field can either be given as a sequence
of scalar array views (one for each vector field component), represented by an
iterator range, or by a single vector array with the appropriate shape.
This function is implemented by calls to
\ref separableConvolveMultiArray() with the suitable kernels, followed by summation.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is otherwise optional
unless the parameter <tt>sigma</tt> is omitted.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// specify input vector field as a sequence of scalar arrays
template <class Iterator,
unsigned int N, class T, class S>
void
gaussianDivergenceMultiArray(Iterator vectorField, Iterator vectorFieldEnd,
MultiArrayView<N, T, S> divergence,
ConvolutionOptions<N> const & opt);
template <class Iterator,
unsigned int N, class T, class S>
void
gaussianDivergenceMultiArray(Iterator vectorField, Iterator vectorFieldEnd,
MultiArrayView<N, T, S> divergence,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
// pass input vector field as an array of vectors
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianDivergenceMultiArray(MultiArrayView<N, TinyVector<T1, N>, S1> const & vectorField,
MultiArrayView<N, T2, S2> divergence,
ConvolutionOptions<N> const & opt);
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
gaussianDivergenceMultiArray(MultiArrayView<N, TinyVector<T1, N>, S1> const & vectorField,
MultiArrayView<N, T2, S2> divergence,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
}
\endcode
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, TinyVector<float, 3> > source(shape);
MultiArray<3, float> laplacian(shape);
...
// compute divergence at scale sigma
gaussianDivergenceMultiArray(source, laplacian, sigma);
\endcode
<b> Usage with anisotropic data:</b>
\code
MultiArray<3, TinyVector<float, 3> > source(shape);
MultiArray<3, float> laplacian(shape);
TinyVector<float, 3> step_size;
TinyVector<float, 3> resolution_sigmas;
...
// compute divergence at scale sigma
gaussianDivergenceMultiArray(source, laplacian, sigma,
ConvolutionOptions<3>().stepSize(step_size).resolutionStdDev(resolution_sigmas));
\endcode
*/
doxygen_overloaded_function(template <...> void gaussianDivergenceMultiArray)
template <class Iterator,
unsigned int N, class T, class S>
void
gaussianDivergenceMultiArray(Iterator vectorField, Iterator vectorFieldEnd,
MultiArrayView<N, T, S> divergence,
ConvolutionOptions<N> opt)
{
typedef typename std::iterator_traits<Iterator>::value_type ArrayType;
typedef typename ArrayType::value_type SrcType;
typedef typename NumericTraits<SrcType>::RealPromote TmpType;
typedef Kernel1D<double> Kernel;
vigra_precondition(std::distance(vectorField, vectorFieldEnd) == N,
"gaussianDivergenceMultiArray(): wrong number of input arrays.");
// more checks are performed in separableConvolveMultiArray()
typename ConvolutionOptions<N>::ScaleIterator params = opt.scaleParams();
ArrayVector<double> sigmas(N);
ArrayVector<Kernel> kernels(N);
for(unsigned int k = 0; k < N; ++k, ++params)
{
sigmas[k] = params.sigma_scaled("gaussianDivergenceMultiArray");
kernels[k].initGaussian(sigmas[k], 1.0, opt.window_ratio);
}
MultiArray<N, TmpType> tmpDeriv(divergence.shape());
for(unsigned int k=0; k < N; ++k, ++vectorField)
{
kernels[k].initGaussianDerivative(sigmas[k], 1, 1.0, opt.window_ratio);
if(k == 0)
{
separableConvolveMultiArray(*vectorField, divergence, kernels.begin(), opt.from_point, opt.to_point);
}
else
{
separableConvolveMultiArray(*vectorField, tmpDeriv, kernels.begin(), opt.from_point, opt.to_point);
divergence += tmpDeriv;
}
kernels[k].initGaussian(sigmas[k], 1.0, opt.window_ratio);
}
}
template <class Iterator,
unsigned int N, class T, class S>
inline void
gaussianDivergenceMultiArray(Iterator vectorField, Iterator vectorFieldEnd,
MultiArrayView<N, T, S> divergence,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
gaussianDivergenceMultiArray(vectorField, vectorFieldEnd, divergence, opt.stdDev(sigma));
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianDivergenceMultiArray(MultiArrayView<N, TinyVector<T1, N>, S1> const & vectorField,
MultiArrayView<N, T2, S2> divergence,
ConvolutionOptions<N> const & opt)
{
ArrayVector<MultiArrayView<N, T1> > field;
for(unsigned int k=0; k<N; ++k)
field.push_back(vectorField.bindElementChannel(k));
gaussianDivergenceMultiArray(field.begin(), field.end(), divergence, opt);
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
gaussianDivergenceMultiArray(MultiArrayView<N, TinyVector<T1, N>, S1> const & vectorField,
MultiArrayView<N, T2, S2> divergence,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
gaussianDivergenceMultiArray(vectorField, divergence, opt.stdDev(sigma));
}
/********************************************************/
/* */
/* hessianOfGaussianMultiArray */
/* */
/********************************************************/
/** \brief Calculate Hessian matrix of a N-dimensional arrays using Gaussian derivative filters.
This function computes the Hessian matrix the given scalar N-dimensional
array with a sequence of second-derivative-of-Gaussian filters at the given
standard deviation <tt>sigma</tt>. The destination array must
have a vector valued element type with N*(N+1)/2 elements (it represents the
upper triangular part of the symmetric Hessian matrix, flattened row-wise).
This function is implemented by calls to
\ref separableConvolveMultiArray() with the appropriate kernels.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is otherwise optional
unless the parameter <tt>sigma</tt> is omitted.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// pass scale explicitly
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
hessianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
// pass scale(s) in option object
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
hessianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
ConvolutionOptions<N> opt);
}
\endcode
\deprecatedAPI{hessianOfGaussianMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
hessianOfGaussianMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
hessianOfGaussianMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<N> & opt = ConvolutionOptions<N>());
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, float> source(shape);
MultiArray<3, TinyVector<float, 6> > dest(shape);
...
// compute Hessian at scale sigma
hessianOfGaussianMultiArray(source, dest, sigma);
\endcode
<b> Usage with anisotropic data:</b>
\code
MultiArray<3, float> source(shape);
MultiArray<3, TinyVector<float, 6> > dest(shape);
TinyVector<float, 3> step_size;
TinyVector<float, 3> resolution_sigmas;
...
// compute Hessian at scale sigma
hessianOfGaussianMultiArray(source, dest, sigma,
ConvolutionOptions<3>().stepSize(step_size).resolutionStdDev(resolution_sigmas));
\endcode
\see separableConvolveMultiArray(), vectorToTensorMultiArray()
*/
doxygen_overloaded_function(template <...> void hessianOfGaussianMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
hessianOfGaussianMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest,
ConvolutionOptions<SrcShape::static_size> const & opt )
{
typedef typename DestAccessor::value_type DestType;
typedef typename DestType::value_type DestValueType;
typedef typename NumericTraits<DestValueType>::RealPromote KernelType;
static const int N = SrcShape::static_size;
static const int M = N*(N+1)/2;
typedef typename ConvolutionOptions<N>::ScaleIterator ParamType;
for(int k=0; k<N; ++k)
if(shape[k] <=0)
return;
vigra_precondition(M == (int)dest.size(di),
"hessianOfGaussianMultiArray(): Wrong number of channels in output array.");
ParamType params_init = opt.scaleParams();
ArrayVector<Kernel1D<KernelType> > plain_kernels(N);
ParamType params(params_init);
for (int dim = 0; dim < N; ++dim, ++params)
{
double sigma = params.sigma_scaled("hessianOfGaussianMultiArray");
plain_kernels[dim].initGaussian(sigma, 1.0, opt.window_ratio);
}
typedef VectorElementAccessor<DestAccessor> ElementAccessor;
// compute elements of the Hessian matrix
ParamType params_i(params_init);
for (int b=0, i=0; i<N; ++i, ++params_i)
{
ParamType params_j(params_i);
for (int j=i; j<N; ++j, ++b, ++params_j)
{
ArrayVector<Kernel1D<KernelType> > kernels(plain_kernels);
if(i == j)
{
kernels[i].initGaussianDerivative(params_i.sigma_scaled(), 2, 1.0, opt.window_ratio);
}
else
{
kernels[i].initGaussianDerivative(params_i.sigma_scaled(), 1, 1.0, opt.window_ratio);
kernels[j].initGaussianDerivative(params_j.sigma_scaled(), 1, 1.0, opt.window_ratio);
}
detail::scaleKernel(kernels[i], 1 / params_i.step_size());
detail::scaleKernel(kernels[j], 1 / params_j.step_size());
separableConvolveMultiArray(si, shape, src, di, ElementAccessor(b, dest),
kernels.begin(), opt.from_point, opt.to_point);
}
}
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
hessianOfGaussianMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest, double sigma,
ConvolutionOptions<SrcShape::static_size> opt = ConvolutionOptions<SrcShape::static_size>())
{
hessianOfGaussianMultiArray(si, shape, src, di, dest, opt.stdDev(sigma));
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
hessianOfGaussianMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
ConvolutionOptions<SrcShape::static_size> const & opt )
{
hessianOfGaussianMultiArray( source.first, source.second, source.third,
dest.first, dest.second, opt );
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
hessianOfGaussianMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double sigma,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
hessianOfGaussianMultiArray( source.first, source.second, source.third,
dest.first, dest.second, sigma, opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
hessianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
ConvolutionOptions<N> opt )
{
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"hessianOfGaussianMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"hessianOfGaussianMultiArray(): shape mismatch between input and output.");
}
hessianOfGaussianMultiArray( srcMultiArrayRange(source),
destMultiArray(dest), opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
hessianOfGaussianMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
double sigma,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
hessianOfGaussianMultiArray( source, dest, opt.stdDev(sigma) );
}
namespace detail {
template<int N, class VectorType>
struct StructurTensorFunctor
{
typedef VectorType result_type;
typedef typename VectorType::value_type ValueType;
template <class T>
VectorType operator()(T const & in) const
{
VectorType res;
for(int b=0, i=0; i<N; ++i)
{
for(int j=i; j<N; ++j, ++b)
{
res[b] = detail::RequiresExplicitCast<ValueType>::cast(in[i]*in[j]);
}
}
return res;
}
};
} // namespace detail
/********************************************************/
/* */
/* structureTensorMultiArray */
/* */
/********************************************************/
/** \brief Calculate th structure tensor of a multi-dimensional arrays.
This function computes the gradient (outer product) tensor for each element
of the given N-dimensional array with first-derivative-of-Gaussian filters at
the given <tt>innerScale</tt>, followed by Gaussian smoothing at <tt>outerScale</tt>.
The destination array must have a vector valued pixel type with
N*(N+1)/2 elements (it represents the upper triangular part of the symmetric
structure tensor matrix, flattened row-wise). If the source array is also vector valued, the
resulting structure tensor is the sum of the individual tensors for each channel.
This function is implemented by calls to
\ref separableConvolveMultiArray() with the appropriate kernels.
Anisotropic data should be passed with appropriate
\ref ConvolutionOptions, the parameter <tt>opt</tt> is otherwise optional
unless the parameters <tt>innerScale</tt> and <tt>outerScale</tt> are
both omitted.
<b> Declarations:</b>
pass arbitrary-dimensional array views:
\code
namespace vigra {
// pass scales explicitly
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
structureTensorMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
double innerScale, double outerScale,
ConvolutionOptions<N> opt = ConvolutionOptions<N>());
// pass scales in option object
template <unsigned int N, class T1, class S1,
class T2, class S2>
void
structureTensorMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
ConvolutionOptions<N> opt );
}
\endcode
\deprecatedAPI{structureTensorMultiArray}
pass \ref MultiIteratorPage "MultiIterators" and \ref DataAccessors :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
structureTensorMultiArray(SrcIterator siter, SrcShape const & shape, SrcAccessor src,
DestIterator diter, DestAccessor dest,
double innerScale, double outerScale,
ConvolutionOptions<N> opt);
}
\endcode
use argument objects in conjunction with \ref ArgumentObjectFactories :
\code
namespace vigra {
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
structureTensorMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double innerScale, double outerScale,
const ConvolutionOptions<N> & opt);
}
\endcode
\deprecatedEnd
<b> Usage:</b>
<b>\#include</b> \<vigra/multi_convolution.hxx\><br/>
Namespace: vigra
\code
Shape3 shape(width, height, depth);
MultiArray<3, RGBValue<float> > source(shape);
MultiArray<3, TinyVector<float, 6> > dest(shape);
...
// compute structure tensor at scales innerScale and outerScale
structureTensorMultiArray(source, dest, innerScale, outerScale);
\endcode
<b> Usage with anisotropic data:</b>
\code
MultiArray<3, RGBValue<float> > source(shape);
MultiArray<3, TinyVector<float, 6> > dest(shape);
TinyVector<float, 3> step_size;
TinyVector<float, 3> resolution_sigmas;
...
// compute structure tensor at scales innerScale and outerScale
structureTensorMultiArray(source, dest, innerScale, outerScale,
ConvolutionOptions<3>().stepSize(step_size).resolutionStdDev(resolution_sigmas));
\endcode
\see separableConvolveMultiArray(), vectorToTensorMultiArray()
*/
doxygen_overloaded_function(template <...> void structureTensorMultiArray)
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
void
structureTensorMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest,
ConvolutionOptions<SrcShape::static_size> opt)
{
static const int N = SrcShape::static_size;
static const int M = N*(N+1)/2;
typedef typename DestAccessor::value_type DestType;
typedef typename DestType::value_type DestValueType;
typedef typename NumericTraits<DestValueType>::RealPromote KernelType;
typedef TinyVector<KernelType, N> GradientVector;
typedef typename AccessorTraits<GradientVector>::default_accessor GradientAccessor;
typedef typename AccessorTraits<DestType>::default_accessor GradientTensorAccessor;
for(int k=0; k<N; ++k)
if(shape[k] <=0)
return;
vigra_precondition(M == (int)dest.size(di),
"structureTensorMultiArray(): Wrong number of channels in output array.");
ConvolutionOptions<N> innerOptions = opt;
ConvolutionOptions<N> outerOptions = opt.outerOptions();
typename ConvolutionOptions<N>::ScaleIterator params = outerOptions.scaleParams();
SrcShape gradientShape(shape);
if(opt.to_point != SrcShape())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(shape, opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(shape, opt.to_point);
for(int k=0; k<N; ++k, ++params)
{
Kernel1D<double> gauss;
gauss.initGaussian(params.sigma_scaled("structureTensorMultiArray"), 1.0, opt.window_ratio);
int dilation = gauss.right();
innerOptions.from_point[k] = std::max<MultiArrayIndex>(0, opt.from_point[k] - dilation);
innerOptions.to_point[k] = std::min<MultiArrayIndex>(shape[k], opt.to_point[k] + dilation);
}
outerOptions.from_point -= innerOptions.from_point;
outerOptions.to_point -= innerOptions.from_point;
gradientShape = innerOptions.to_point - innerOptions.from_point;
}
MultiArray<N, GradientVector> gradient(gradientShape);
MultiArray<N, DestType> gradientTensor(gradientShape);
gaussianGradientMultiArray(si, shape, src,
gradient.traverser_begin(), GradientAccessor(),
innerOptions,
"structureTensorMultiArray");
transformMultiArray(gradient.traverser_begin(), gradientShape, GradientAccessor(),
gradientTensor.traverser_begin(), GradientTensorAccessor(),
detail::StructurTensorFunctor<N, DestType>());
gaussianSmoothMultiArray(gradientTensor.traverser_begin(), gradientShape, GradientTensorAccessor(),
di, dest, outerOptions,
"structureTensorMultiArray");
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
structureTensorMultiArray(SrcIterator si, SrcShape const & shape, SrcAccessor src,
DestIterator di, DestAccessor dest,
double innerScale, double outerScale,
ConvolutionOptions<SrcShape::static_size> opt = ConvolutionOptions<SrcShape::static_size>())
{
structureTensorMultiArray(si, shape, src, di, dest,
opt.stdDev(innerScale).outerScale(outerScale));
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
structureTensorMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
ConvolutionOptions<SrcShape::static_size> const & opt )
{
structureTensorMultiArray( source.first, source.second, source.third,
dest.first, dest.second, opt );
}
template <class SrcIterator, class SrcShape, class SrcAccessor,
class DestIterator, class DestAccessor>
inline void
structureTensorMultiArray(triple<SrcIterator, SrcShape, SrcAccessor> const & source,
pair<DestIterator, DestAccessor> const & dest,
double innerScale, double outerScale,
const ConvolutionOptions<SrcShape::static_size> & opt = ConvolutionOptions<SrcShape::static_size>())
{
structureTensorMultiArray( source.first, source.second, source.third,
dest.first, dest.second,
innerScale, outerScale, opt);
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
structureTensorMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
ConvolutionOptions<N> opt )
{
if(opt.to_point != typename MultiArrayShape<N>::type())
{
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.from_point);
detail::RelativeToAbsoluteCoordinate<N-1>::exec(source.shape(), opt.to_point);
vigra_precondition(dest.shape() == (opt.to_point - opt.from_point),
"structureTensorMultiArray(): shape mismatch between ROI and output.");
}
else
{
vigra_precondition(source.shape() == dest.shape(),
"structureTensorMultiArray(): shape mismatch between input and output.");
}
structureTensorMultiArray( srcMultiArrayRange(source),
destMultiArray(dest), opt );
}
template <unsigned int N, class T1, class S1,
class T2, class S2>
inline void
structureTensorMultiArray(MultiArrayView<N, T1, S1> const & source,
MultiArrayView<N, TinyVector<T2, int(N*(N+1)/2)>, S2> dest,
double innerScale, double outerScale,
ConvolutionOptions<N> opt = ConvolutionOptions<N>())
{
structureTensorMultiArray(source, dest, opt.innerScale(innerScale).outerScale(outerScale));
}
//@}
} //-- namespace vigra
#endif //-- VIGRA_MULTI_CONVOLUTION_H
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