/usr/share/doc/mafft/test/script is in mafft 7.271-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 | mafft sample > x
diff x sample.fftns2 || exit
mafft --maxiterate 100 sample > x
diff x sample.fftnsi || exit
mafft --dpparttree sample > x
diff x sample.dpparttree || exit
mafft --globalpair sample > x
diff x sample.gins1 || exit
mafft --globalpair --maxiterate 100 sample > x
diff x sample.ginsi || exit
mafft --allowshift --globalpair --maxiterate 100 sample > x
diff x sample.ginsi.allowshift || exit
mafft --localpair sample > x
diff x sample.lins1 || exit
mafft --localpair --maxiterate 100 sample > x
diff x sample.linsi || exit
mafft --parttree sample > x
diff x sample.parttree || exit
mafft-qinsi samplerna > x
diff x samplerna.qinsi || exit
mafft-xinsi samplerna > x
diff x samplerna.xinsi || exit
rm x
|