/usr/share/arc/PBS.pm is in nordugrid-arc-arex 5.0.5-1ubuntu1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 | package PBS;
use strict;
our @ISA = ('Exporter');
# Module implements these subroutines for the LRMS interface
our @EXPORT_OK = ('cluster_info',
'queue_info',
'jobs_info',
'users_info',
'nodes_info');
use LogUtils ( 'start_logging', 'error', 'warning', 'debug' );
##########################################
# Saved private variables
##########################################
our(%lrms_queue);
my (%user_jobs_running, %user_jobs_queued);
# the queue passed in the latest call to queue_info, jobs_info or users_info
my $currentqueue = undef;
# cache info about nodes
my $pbsnodes;
# PBS type and flavour
my $lrms_type = undef;
my $lrms_version = undef;
# Resets queue-specific global variables if
# the queue has changed since the last call
sub init_globals($) {
my $qname = shift;
if (not defined $currentqueue or $currentqueue ne $qname) {
$currentqueue = $qname;
%lrms_queue = ();
%user_jobs_running = ();
%user_jobs_queued = ();
}
}
# get PBS type and version
sub get_pbs_version ($) {
return unless not defined $lrms_type;
# path to LRMS commands
my ($config) = shift;
my ($path) = $$config{pbs_bin_path};
# determine the flavour and version of PBS
my $qmgr_string=`$path/qmgr -c "list server"`;
if ( $? != 0 ) {
warning("Can't run qmgr");
}
if ($qmgr_string =~ /pbs_version = \b(\D+)_(\d\S+)\b/) {
$lrms_type = $1;
$lrms_version = $2;
} else {
$qmgr_string =~ /pbs_version = \b(\d\S+)\b/;
$lrms_type = "torque";
$lrms_version = $1;
}
}
##########################################
# Private subs
##########################################
sub read_pbsnodes ($) {
return %$pbsnodes if $pbsnodes;
#processing the pbsnodes output by using a hash of hashes
# %hoh_pbsnodes (referrenced by $hashref)
my ( $path ) = shift;
my ( %hoh_pbsnodes);
my ($nodeid,$node_var,$node_value);
unless (open PBSNODESOUT, "$path/pbsnodes -a 2>/dev/null |") {
error("error in executing pbsnodes");
}
while (my $line= <PBSNODESOUT>) {
if ($line =~ /^$/) {next};
if ($line =~ /^([\w\-]+)/) {
$nodeid= $1 ;
next;
}
if ($line =~ / = /) {
($node_var,$node_value) = split (/ = /, $line);
$node_var =~ s/\s+//g;
chop $node_value;
}
$hoh_pbsnodes{$nodeid}{$node_var} = $node_value;
}
close PBSNODESOUT;
$pbsnodes = \%hoh_pbsnodes;
return %hoh_pbsnodes;
}
# Splits up the value of the exec_host string.
# Returns a list of node names, one for each used cpu.
# Should handle node specs of the form:
# (1) node1/0+node0/1+node0/2+node2/1 (torque)
# (2) hosta/J1+hostb/J2*P (according to the PBSPro manual)
# (3) node1+node1+node2+node2
# (4) altix:ssinodes=2:mem=7974912kb:ncpus=4 (found on the web)
# (5) grid-wn0749.desy.de/2 Resource_List.neednodes=1:ppn=8 (reported by Andreas Gellrich from Desy HH)
sub split_hostlist {
my ($exec_host_string) = @_;
my @nodes;
my $err;
for my $nodespec (split '\+', $exec_host_string) {
if ($nodespec =~ m{^([^/:]+)/\d+(?:\*(\d+))?$}) { # cases (1) and (2)
my ($nodename, $multiplier) = ($1, $2 || 1);
push @nodes, $nodename for 1..$multiplier;
} elsif ($nodespec =~ m{^([^/:]+)(?::(.+))?$}) { # cases (3) and (4)
my ($nodename, $resc) = ($1, $2 || '');
my $multiplier = get_ncpus($resc);
push @nodes, $nodename for 1..$multiplier;
} elsif ($nodespec =~ m{^([^/]+)/\d+ Resource_List\.neednodes=(\d+):ppn=(\d+)?$} ){ # case (5)
my $nodename = $1;
my $numnodes = $2 || 1;
my $ppn = $3 || 1;
my $multiplier = $ppn; #Not sure if this is the correct multiplier. Is there an entry for each node? or should multiplier be numnodes*ppn?
push @nodes, $nodename for 1..$multiplier;
} else {
$err = $nodespec;
}
}
warning("failed counting nodes in expression: $exec_host_string") if $err;
return @nodes;
}
# Deduces the number of requested cpus from the values of these job properties:
# Resource_List.select (PBSPro 8+)
# Resource_List.nodes
# Resource_List.ncpus
sub set_cpucount {
my ($job) = (@_);
my $select = $job->{"Resource_List.select"};
my $nodes = $job->{"Resource_List.nodes"};
my $ncpus = $job->{"Resource_List.ncpus"};
$job->{cpus} = count_usedcpus($select, $nodes, $ncpus);
delete $job->{"Resource_List.select"};
delete $job->{"Resource_List.nodes"};
delete $job->{"Resource_List.ncpus"};
}
# Convert time from [DD:[HH:[MM:]]]SS to minutes
sub count_time {
my $pbs_time = shift;
# split and reverse PBS time to start from seconds, then drop seconds
my @t = reverse split /:/, $pbs_time;
my $minutes = 0;
if ( ! defined $t[1] ) {
# PBS seconds only case
$minutes = int( $t[0] / 60 );
} else {
# drop seconds
shift @t;
$minutes = $t[0];
$minutes += $t[1]*60 if defined $t[1];
$minutes += $t[2]*60*24 if defined $t[2];
}
return $minutes;
}
sub count_usedcpus {
my ($select, $nodes, $ncpus) = @_;
return sum_over_chunks(\&cpus_in_select_chunk, $select) if defined $select;
return $ncpus || 1 if not defined $nodes or $nodes eq '1';
return sum_over_chunks(\&cpus_in_nodes_chunk, $nodes) if defined $nodes;
return 1;
}
sub sum_over_chunks {
my ($count_func, $string) = @_;
my $totalcpus = 0;
for my $chunk (split '\+', $string) {
my $cpus = &$count_func($chunk);
$totalcpus += $cpus;
}
return $totalcpus;
}
# counts cpus in chunk definitions of the forms found in Resource_List.nodes property
# 4
# 2:ppn=2
# host1
# host1:prop1:prop2
# prop1:prop2:ppn=4
sub cpus_in_nodes_chunk {
my ($chunk) = @_;
my ($ncpus,$dummy) = split ':', $chunk;
$ncpus = 1 if $ncpus =~ m/\D/; # chunk count ommited
return $ncpus * get_ppn($chunk);
}
# counts cpus in chunk definitions of the forms found in Resource_List.select (PBSPro 8+):
# 4
# 2:ncpus=1
# 1:ncpus=4:mpiprocs=4:host=hostA
sub cpus_in_select_chunk {
my ($chunk) = @_;
return $1 if $chunk =~ m/^(\d+)$/;
if ($chunk =~ m{^(\d+):(.*)$}) {
my ($cpus, $resc) = ($1, $2);
return $cpus * get_ncpus($resc);
}
return 0; # not a valid chunk
}
# extracts the value of ppn from a string like blah:ppn=N:blah
sub get_ppn {
my ($resc) = @_;
for my $res (split ':', $resc) {
return $1 if $res =~ m /^ppn=(\d+)$/;
}
return 1;
}
# extracts the value of ncpus from a string like blah:ncpus=N:blah
sub get_ncpus {
my ($resc) = @_;
for my $res (split ':', $resc) {
return $1 if $res =~ m /^ncpus=(\d+)$/;
}
return 1;
}
sub get_variable($$){
my $match = shift;
my $string = shift;
$string =~ m/(\w\s)*?$match\s?[=:] ((\w|\s|\/|,|.|:|;|\[|\]|\(|\)|-)*?)($| \w+=.*)/ ;
my $var = $2;
return $var;
}
sub read_qstat_f ($) {
my $path=shift;
unless ( open QSTAT_F, "$path/qstat -f 2>/dev/null |") {
error("Error in executing qstat");
}
my $jobid="";
my %qstat_jobs;
my $rs=$/;
$/="";
while (<QSTAT_F>) {
s/\n\t//g;
foreach(split(/\n/)) {
my $string = $_;
if ($string =~ /Job Id/) {
$jobid= get_variable("Job Id", $string);
}
if (!$jobid) {
next;
}
if ($string =~ /Resource_List.nodes/){
$qstat_jobs{$jobid}{"Resource_List.nodes"}= get_variable("Resource_List.nodes",$string);
}
if ($string =~ /exec_host/){
$qstat_jobs{$jobid}{"exec_host"}= get_variable("exec_host",$string);
}
if ($string =~ /job_state/){
$qstat_jobs{$jobid}{"job_state"}= get_variable("job_state",$string);
}
if ($string =~ /Resource_List.select/){
$qstat_jobs{$jobid}{"Resource_List.select"}= get_variable("Resource_List.select",$string);
}
if ($string =~ /Resource_List.ncpus/){
$qstat_jobs{$jobid}{"Resource_List.ncpus"}= get_variable("Resource_List.ncpus",$string);
}
}
};
$/=$rs;
close QSTAT_F;
return %qstat_jobs;
}
# gets information about each destination queue behind a
# routing queue and copies it into the routing queue data structure.
# at the moment it only copies data from the first queue
#
# input: $queue name of the current queue
# $path to pbs binaries
# $singledqueue that contains the only queue behind the routing one
# %qstat{} for the current queue
# output: the %dqueue hash containing info about destination queues
# in %lrms_queue fashion
sub process_dqueues($$%){
my $qname = shift;
my $path = shift;
my (%qstat) = %{$_[0]};
my $singledqueue;
my %dqueues;
# build DQs data structure
my @dqnames;
if (defined $qstat{'route_destinations'}) {
@dqnames=split(",",$qstat{'route_destinations'});
@dqueues{@dqnames}=undef;
foreach my $dqname ( keys %dqueues ) {
debug("Processing queues behind routing queue. Current queue is $dqname");
my (%dqstat);
unless (open QSTATOUTPUT, "$path/qstat -Q -f $dqname 2>/dev/null |") {
error("Error in executing qstat: $path/qstat -Q -f $dqname");
}
while (my $line= <QSTATOUTPUT>) {
if ($line =~ m/ = /) {
chomp($line);
my ($dqstat_var,$dqstat_value) = split("=", $line);
$dqstat_var =~ s/\s+//g;
$dqstat_value =~ s/\s+//g;
$dqstat{$dqstat_var}=$dqstat_value;
}
}
close QSTATOUTPUT;
$dqueues{$dqname}=\%dqstat;
}
# debug($dqueues{'verylong'}{'resources_max.walltime'});
}
else {
error("No route_destinations for routing queue $qname. Please check LRMS configuration.");
}
# take the first destination queue behind the RQ, copy its data to the RQ
# this happens only if the RQ has no data defined on PBS
# this should solve bug #859
$singledqueue=shift(@dqnames);
debug('Just one queue behind routing queue is currently supported: '.$singledqueue);
my @attributes=(
'max_running',
'max_user_run',
'max_queuable',
'resources_max.cput',
'resources_min.cput',
'resources_default.cput',
'resources_max.walltime',
'resources_min.walltime',
'resources_default.walltime',
'state_count'
);
foreach my $rkey (@attributes) {
# line to check queues under routing queue values. Undefined values generate crap in logs,
# so is commented out.
# debug('with key '.$rkey.' qstat returns '.$qstat{$rkey}.' and the dest. queue has '.$dqueues{$singledqueue}{$rkey} );
if (!defined $qstat{$rkey}) {${$_[0]}{$rkey}=$dqueues{$singledqueue}{$rkey};};
}
return %dqueues;
}
############################################
# Public subs
#############################################
sub cluster_info ($) {
# Path to LRMS commands
my ($config) = shift;
my ($path) = $$config{pbs_bin_path};
# Return data structure %lrms_cluster{$keyword}
#
# All values should be defined, empty values "" are ok if field
# does not apply to particular LRMS.
my (%lrms_cluster);
# flavour and version of PBS
get_pbs_version($config);
$lrms_cluster{lrms_type} = $lrms_type;
$lrms_cluster{lrms_glue_type}=lc($lrms_type);
$lrms_cluster{lrms_version} = $lrms_version;
if ( $lrms_type eq "torque" and
exists $$config{scheduling_policy} and
lc($$config{scheduling_policy}) eq "maui") {
$lrms_cluster{lrms_glue_type}="torquemaui";
}
# PBS treats cputime limit for parallel/multi-cpu jobs as job-total
$lrms_cluster{has_total_cputime_limit} = 1;
# processing the pbsnodes output by using a hash of hashes %hoh_pbsnodes
my ( %hoh_pbsnodes ) = read_pbsnodes( $path );
error("The given flavour of PBS $lrms_cluster{lrms_type} is not supported")
unless grep {$_ eq lc($lrms_cluster{lrms_type})}
qw(openpbs spbs torque pbspro);
$lrms_cluster{totalcpus} = 0;
my ($number_of_running_jobs) = 0;
$lrms_cluster{cpudistribution} = "";
my (@cpudist) = 0;
my %available_nodes = ();
# loop over all available nodes
foreach my $node (keys %hoh_pbsnodes) {
# skip nodes that does not conform dedicated_node_string filter
if ( exists $$config{dedicated_node_string} && $$config{dedicated_node_string} ne "") {
next unless ( $hoh_pbsnodes{$node}{"properties"} =~
m/^([^,]+,)*$$config{dedicated_node_string}(,[^,]+)*$/);
}
# add node to available_nodes hash
$available_nodes{$node} = 1;
# get node state and number of CPUs
my ($nodestate) = $hoh_pbsnodes{$node}{"state"};
my $nodecpus;
if ($hoh_pbsnodes{$node}{'np'}) {
$nodecpus = $hoh_pbsnodes{$node}{'np'};
} elsif ($hoh_pbsnodes{$node}{'resources_available.ncpus'}) {
$nodecpus = $hoh_pbsnodes{$node}{'resources_available.ncpus'};
}
next if ($nodestate=~/down/ or $nodestate=~/offline/);
if ($nodestate=~/(?:,|^)busy/) {
$lrms_cluster{totalcpus} += $nodecpus;
$cpudist[$nodecpus] +=1;
$number_of_running_jobs += $nodecpus;
next;
}
$lrms_cluster{totalcpus} += $nodecpus;
$cpudist[$nodecpus] += 1;
if ($hoh_pbsnodes{$node}{"jobs"}){
$number_of_running_jobs++;
my ( @comma ) = ($hoh_pbsnodes{$node}{"jobs"}=~ /,/g);
$number_of_running_jobs += @comma;
}
}
# form LRMS cpudistribution string
for (my $i=0; $i<=$#cpudist; $i++) {
next unless ($cpudist[$i]);
$lrms_cluster{cpudistribution} .= " ".$i."cpu:".$cpudist[$i];
}
# read the qstat -n information about all jobs
# queued cpus, total number of cpus in all jobs
$lrms_cluster{usedcpus} = 0;
$lrms_cluster{queuedcpus} = 0;
$lrms_cluster{queuedjobs} = 0;
$lrms_cluster{runningjobs} = 0;
my %qstat_jobs = read_qstat_f($path);
for my $key (keys %qstat_jobs) {
# usercpus (running jobs)
if ( $qstat_jobs{$key}{job_state} =~ /R/) {
$lrms_cluster{runningjobs}++;
my @nodes = split_hostlist($qstat_jobs{$key}{exec_host});
# filter using dedicated_node_string
foreach my $node ( @nodes ) {
next unless defined $available_nodes{$node};
$lrms_cluster{usedcpus}++;
}
}
#
if ( $qstat_jobs{$key}{job_state} =~ /(W|T|Q)/) {
$lrms_cluster{queuedjobs}++;
$lrms_cluster{queuedcpus}+=count_usedcpus($qstat_jobs{$key}{"Resource_List.select"},
$qstat_jobs{$key}{"Resource_List.nodes"},
$qstat_jobs{$key}{"Resource_List.ncpus"});
}
}
# Names of all LRMS queues
@{$lrms_cluster{queue}} = ();
unless (open QSTATOUTPUT, "$path/qstat -Q 2>/dev/null |") {
error("Error in executing qstat");
}
while (my $line= <QSTATOUTPUT>) {
if ( $. == 1 or $. == 2 ) {next} # Skip header lines
my (@a) = split " ", $line;
push @{$lrms_cluster{queue}}, $a[0];
}
close QSTATOUTPUT;
return %lrms_cluster;
}
sub queue_info ($$) {
# Path to LRMS commands
my ($config) = shift;
my ($path) = $$config{pbs_bin_path};
# Name of the queue to query
my ($qname) = shift;
init_globals($qname);
# The return data structure is %lrms_queue.
# In this template it is defined as persistent module data structure,
# because it is later used by jobs_info(), and we wish to avoid
# re-construction of it. If it were not needed later, it would be defined
# only in the scope of this subroutine, as %lrms_cluster previously.
# Return data structure %lrms_queue{$keyword}
#
# All values should be defined, empty values "" are ok if field
# does not apply to particular LRMS.
# read the queue information for the queue entry from the qstat
my (%qstat);
unless (open QSTATOUTPUT, "$path/qstat -Q -f $qname 2>/dev/null |") {
error("Error in executing qstat: $path/qstat -Q -f $qname");
}
while (my $line= <QSTATOUTPUT>) {
if ($line =~ m/ = /) {
chomp($line);
my ($qstat_var,$qstat_value) = split("=", $line);
$qstat_var =~ s/\s+//g;
$qstat_value =~ s/\s+//g;
$qstat{$qstat_var}=$qstat_value;
}
}
close QSTATOUTPUT;
# this script contain a solution for a single queue behind the
# routing one, the routing queue will inherit some of its
# attributes.
# this hash contains qstat records for queues - in this case just one
my %dqueues;
# this variable contains the single destination queue
my $singledqueue;
if ($qstat{queue_type} =~ /Route/) {
%dqueues = process_dqueues($qname,$path,\%qstat);
$singledqueue = ( keys %dqueues )[0];
} else {
undef %dqueues;
undef $singledqueue;
}
# publish queue limits parameters
# general limits (publish as is)
my (%keywords);
my (%keywords_all) = ( 'max_running' => 'maxrunning',
'max_user_run' => 'maxuserrun',
'max_queuable' => 'maxqueuable' );
# TODO: MinSlots, etc.
my (%keywords_torque) = ( 'resources_max.procct' => 'MaxSlotsPerJob' );
my (%keywords_pbspro) = ( 'resources_max.ncpus' => 'MaxSlotsPerJob' );
get_pbs_version($config);
if ( $lrms_type eq lc "torque" ) {
%keywords = (%keywords_all, %keywords_torque);
} elsif ( $lrms_type eq lc "pbspro" ) {
%keywords = (%keywords_all, %keywords_pbspro);
} else {
%keywords = %keywords_all;
}
foreach my $k (keys %keywords) {
if (defined $qstat{$k} ) {
$lrms_queue{$keywords{$k}} = $qstat{$k};
} else {
$lrms_queue{$keywords{$k}} = "";
}
}
# queue time limits (convert to minutes)
%keywords = ( 'resources_max.cput' => 'maxcputime',
'resources_min.cput' => 'mincputime',
'resources_default.cput' => 'defaultcput',
'resources_max.walltime' => 'maxwalltime',
'resources_min.walltime' => 'minwalltime',
'resources_default.walltime' => 'defaultwallt' );
foreach my $k (keys %keywords) {
if ( defined $qstat{$k} ) {
$lrms_queue{$keywords{$k}} = (&count_time($qstat{$k})+($k eq 'resources_min.cput'?1:0));
} else {
$lrms_queue{$keywords{$k}} = "";
}
}
# determine the queue status from the LRMS
# Used to be set to 'active' if the queue can accept jobs
# Now lists the number of available processors, "0" if no free
# cpus. Negative number signals some error state of PBS
# (reserved for future use).
# processing the pbsnodes output by using a hash of hashes %hoh_pbsnodes
my ( %hoh_pbsnodes ) = read_pbsnodes( $path );
$lrms_queue{status} = -1;
$lrms_queue{running} = 0;
$lrms_queue{queued} = 0;
$lrms_queue{totalcpus} = 0;
if ( ($qstat{"enabled"} =~ /True/) and ($qstat{"started"} =~ /True/)) {
unless (open QSTATOUTPUT, "$path/qstat -Q -f $qname 2>/dev/null |") {
error("Error in executing qstat: $path/qstat -Q -f $qname");
}
my %qstat;
while (my $line= <QSTATOUTPUT>) {
if ($line =~ m/ = /) {
chomp($line);
my ($qstat_var,$qstat_value) = split("=", $line);
$qstat_var =~ s/\s+//g;
$qstat_value =~ s/\s+//g;
$qstat{$qstat_var}=$qstat_value;
}
}
close QSTATOUTPUT;
# refresh routing queue records, in case something changed on the
# destination queues
if ($qstat{queue_type} =~ /Route/) {
debug("CPUs calculation pass. Queues are scanned a second time. Current queue is: $qstat{queue_type}");
%dqueues = process_dqueues($qname,$path,\%qstat);
# this variable contains the single destination queue
$singledqueue = ( keys %dqueues )[0];
} else {
undef %dqueues;
undef $singledqueue;
}
# qstat does not return number of cpus, use pbsnodes instead.
my ($torque_freecpus,$torque_totalcpus)=(0,0);
foreach my $node (keys %hoh_pbsnodes){
# If pbsnodes have properties assigned to them
# check if queuename or dedicated_node_string matches.
# $singledqueue check has been added for routing queue support,
# also the destination queue is checked to calculate totalcpus
# also adds correct behaviour for queue_node_string
if (
( ! defined $hoh_pbsnodes{$node}{'properties'}
) || (
(
defined $qname &&
$hoh_pbsnodes{$node}{'properties'} =~ m/^([^,]+,)*$qname(,[^,]+)*$/
) || (
defined $$config{dedicated_node_string} &&
$hoh_pbsnodes{$node}{'properties'} =~ m/^([^,]+,)*$$config{dedicated_node_string}(,[^,]+)*$/
) || (
defined $$config{queue_node_string} &&
$hoh_pbsnodes{$node}{'properties'} =~ m/^([^,]+,)*$$config{queue_node_string}(,[^,]+)*$/
) || (
defined $singledqueue &&
$hoh_pbsnodes{$node}{'properties'} =~ m/^([^,]+,)*$singledqueue(,[^,]+)*$/
)
)
) {
my $cpus;
next if $hoh_pbsnodes{$node}{'state'} =~ m/offline/;
next if $hoh_pbsnodes{$node}{'state'} =~ m/down/;
if ($hoh_pbsnodes{$node}{'np'}) {
$cpus = $hoh_pbsnodes{$node}{'np'};
} elsif ($hoh_pbsnodes{$node}{'resources_available.ncpus'}) {
$cpus = $hoh_pbsnodes{$node}{'resources_available.ncpus'};
}
$torque_totalcpus+=$cpus;
if ($hoh_pbsnodes{$node}{'state'} =~ m/free/){
$torque_freecpus+=$cpus;
}
}
}
$lrms_queue{totalcpus} = $torque_totalcpus;
debug("Totalcpus for all queues are: $lrms_queue{totalcpus}");
if(defined $$config{totalcpus}){
if ($lrms_queue{totalcpus} eq "" or $$config{totalcpus} < $lrms_queue{totalcpus}) {
$lrms_queue{totalcpus}=$$config{totalcpus};
}
}
$lrms_queue{status} = $torque_freecpus;
$lrms_queue{status}=0 if $lrms_queue{status} < 0;
if ( $qstat{state_count} =~ m/.*Running:([0-9]*).*/ ){
$lrms_queue{running}=$1;
} else {
$lrms_queue{running}=0;
}
# calculate running in case of a routing queue
if ( $qstat{queue_type} =~ /Route/ ) {
debug($dqueues{$singledqueue}{state_count});
if ( $dqueues{$singledqueue}{state_count} =~ m/.*Running:([0-9]*).*/ ) {
$lrms_queue{running}=$1;
}
}
# the above gets the number of nodes not the number of cores in use. If multi core jobs are running, "running" will be underestimated.
# Instead use totalcpus - freecpus (This might overrepresent running. because pbsnodes count whole nodes in use.)
# CUS (2015-02-09)
my $runningcores = $torque_totalcpus - $torque_freecpus ;
$runningcores = 0 if $runningcores < 0;
$lrms_queue{running} = $runningcores if $runningcores > $lrms_queue{running};
if ($lrms_queue{totalcpus} eq 0) {
warning("Can't determine number of cpus for queue $qname");
}
if ( $qstat{state_count} =~ m/.*Queued:([0-9]*).*/ ){
$lrms_queue{queued}=$1;
} else {
$lrms_queue{queued}=0;
}
# fallback for defult values that are required for normal operation
$lrms_queue{MaxSlotsPerJob} = $lrms_queue{totalcpus} if $lrms_queue{MaxSlotsPerJob} eq "";
# calculate queued in case of a routing queue
# queued jobs is the sum of jobs queued in the routing queue
# plus jobs in the destination queue
if ( $qstat{queue_type} =~ /Route/ ) {
debug($dqueues{$singledqueue}{state_count});
if ( $dqueues{$singledqueue}{state_count} =~ m/.*Queued:([0-9]*).*/ ) {
$lrms_queue{queued}=$lrms_queue{queued}+$1;
}
}
}
return %lrms_queue;
}
sub jobs_info ($$@) {
# Path to LRMS commands
my ($config) = shift;
my ($path) = $$config{pbs_bin_path};
# Name of the queue to query
my ($qname) = shift;
init_globals($qname);
# LRMS job IDs from Grid Manager (jobs with "INLRMS" GM status)
my ($jids) = shift;
# Return data structure %lrms_jobs{$lrms_local_job_id}{$keyword}
#
# All values should be defined, empty values "" are ok if field
# does not apply to particular LRMS.
my (%lrms_jobs);
# Fill %lrms_jobs here (da implementation)
# rank is treated separately as it does not have an entry in
# qstat output, comment because it is an array, and mem
# because "kB" needs to be stripped from the value
my (%skeywords) = ('job_state' => 'status');
my (%tkeywords) = ( 'resources_used.walltime' => 'walltime',
'resources_used.cput' => 'cputime',
'Resource_List.walltime' => 'reqwalltime',
'Resource_List.cputime' => 'reqcputime');
my (%nkeywords) = ( 'Resource_List.select' => 1,
'Resource_List.nodes' => 1,
'Resource_List.ncpus' => 1);
my ($alljids) = join ' ', @{$jids};
my ($rank) = 0;
my %job_owner;
# better rank for maui
my %showqrank;
if (exists $$config{scheduling_policy} and
lc($$config{scheduling_policy}) eq "maui") {
my $showq = (defined $$config{maui_bin_path}) ? $$config{maui_bin_path}."/showq" : "showq";
unless (open SHOWQOUTPUT, " $showq |"){
error("error in executing $showq ");
}
my $idle=-1;
while(my $line=<SHOWQOUTPUT>) {
if($line=~/^IDLE.+/) {
$idle=0;
$line=<SHOWQOUTPUT>;$line=<SHOWQOUTPUT>;
}
next if $idle == -1;
if ($line=~/^(\d+).+/) {
$idle++;
$showqrank{$1}=$idle;
}
}
close SHOWQOUTPUT;
}
my $handle_attr = sub {
my ($jid, $k, $v) = @_;
if ( defined $skeywords{$k} ) {
$lrms_jobs{$jid}{$skeywords{$k}} = $v;
if($k eq "job_state") {
if( $v eq "U" ) {
$lrms_jobs{$jid}{status} = "S";
} elsif ( $v eq "C" ) {
$lrms_jobs{$jid}{status} = ""; # No status means job has completed
} elsif ( $v ne "R" and $v ne "Q" and $v ne "S" and $v ne "E" ) {
$lrms_jobs{$jid}{status} = "O";
}
}
} elsif ( defined $tkeywords{$k} ) {
$lrms_jobs{$jid}{$tkeywords{$k}} = &count_time($v);
} elsif ( defined $nkeywords{$k} ) {
$lrms_jobs{$jid}{$k} = $v;
} elsif ( $k eq 'exec_host' ) {
my @nodes = split_hostlist($v);
$lrms_jobs{$jid}{nodes} = \@nodes;
#$lrms_jobs{$jid}{cpus} = scalar @nodes;
} elsif ( $k eq 'comment' ) {
$lrms_jobs{$jid}{comment} = []
unless $lrms_jobs{$jid}{comment};
push @{$lrms_jobs{$jid}{comment}}, "LRMS: $v";
} elsif ($k eq 'resources_used.vmem') {
$v =~ s/(\d+).*/$1/;
$lrms_jobs{$jid}{mem} = $v;
}
if ( $k eq 'Job_Owner' ) {
$v =~ /(\S+)@/;
$job_owner{$jid} = $1;
}
if ( $k eq 'job_state' ) {
if ($v eq 'R') {
$lrms_jobs{$jid}{rank} = "";
} elsif ($v eq 'C') {
$lrms_jobs{$jid}{rank} = "";
} else {
$rank++;
$lrms_jobs{$jid}{rank} = $rank;
$jid=~/^(\d+).+/;
if (defined $showqrank{$1}) {
$lrms_jobs{$jid}{rank} = $showqrank{$1};
}
}
if ($v eq 'R' or 'E'){
++$user_jobs_running{$job_owner{$jid}};
}
if ($v eq 'Q'){
++$user_jobs_queued{$job_owner{$jid}};
}
}
};
unless (open QSTATOUTPUT, "$path/qstat -f 2>/dev/null |") {
error("Error in executing qstat: $path/qstat -f ");
}
my ($jid, $k, $v) = ();
while (my $line = <QSTATOUTPUT>) {
if ($line =~ /^Job Id:\s+(\d+.*)$/) {
my $pbsjid = $1;
&$handle_attr($jid, $k, $v) if $k and $jid;
set_cpucount($lrms_jobs{$jid}) if $jid;
($jid, $k, $v) = ();
foreach my $j (@$jids) {
if ( $pbsjid =~ /^$j$/ ) {
$jid = $j;
last;
}
}
next;
}
next unless defined $jid;
# a line starting with a tab is a continuation line
if ( $line =~ m/^\t(.+)$/ ) {
$v .= $1;
next;
}
if ( $line =~ m/^\s*(\S+) = (.*)$/ ) {
my ($newk, $newv) = ($1, $2);
&$handle_attr($jid, $k, $v) if $k and $jid;
($k, $v) = ($newk, $newv);
}
}
&$handle_attr($jid, $k, $v) if $k and $jid;
set_cpucount($lrms_jobs{$jid}) if $jid;
close QSTATOUTPUT;
my (@scalarkeywords) = ('status', 'rank', 'mem', 'walltime', 'cputime',
'reqwalltime', 'reqcputime');
foreach $jid ( @$jids ) {
foreach my $k ( @scalarkeywords ) {
if ( ! defined $lrms_jobs{$jid}{$k} ) {
$lrms_jobs{$jid}{$k} = "";
}
}
$lrms_jobs{$jid}{comment} = [] unless $lrms_jobs{$jid}{comment};
$lrms_jobs{$jid}{nodes} = [] unless $lrms_jobs{$jid}{nodes};
}
return %lrms_jobs;
}
sub users_info($$@) {
# Path to LRMS commands
my ($config) = shift;
my ($path) = $$config{pbs_bin_path};
# Name of the queue to query
my ($qname) = shift;
init_globals($qname);
# Unix user names mapped to grid users
my ($accts) = shift;
# Return data structure %lrms_users{$unix_local_username}{$keyword}
#
# All values should be defined, empty values "" are ok if field
# does not apply to particular LRMS.
my (%lrms_users);
# Check that users have access to the queue
unless (open QSTATOUTPUT, "$path/qstat -f -Q $qname 2>/dev/null |") {
error("Error in executing qstat: $path/qstat -f -Q $qname");
}
my $acl_user_enable = 0;
my @acl_users;
my $more_acls = 0;
# added for routing queue support
my @dqueues;
my $singledqueue;
my $isrouting;
while (my $line= <QSTATOUTPUT>) {
chomp $line;
# is this a continuation of the acl line?
if ($more_acls) {
$line =~ s/^\s*//; # strip leading spaces
push @acl_users, split ',', $line;
$more_acls = 0 unless $line =~ /,\s*$/;
next;
}
if ( $line =~ /\s*acl_user_enable/ ) {
my ( $k ,$v ) = split ' = ', $line;
unless ( $v eq 'False' ) {
$acl_user_enable = 1;
}
}
if ( $line =~ /\s*acl_users/ ) {
my ( $k ,$v ) = split ' = ', $line;
unless ( $v eq 'False' ) {
# This condition is kept here in case the reason
# for it being there in the first place was that some
# version or flavour of PBS really has False as an alternative
# to usernames to indicate the absence of user access control
# A Corrallary: Dont name your users 'False' ...
push @acl_users, split ',', $v;
$more_acls = 1 if $v =~ /,\s*$/;
}
}
# added to support routing queues
if (!$acl_user_enable){
if ($line =~ /\s*route_destinations\s=\s(.*)$/) {
@dqueues=split (',',$1);
$singledqueue=shift(@dqueues);
warning('Routing queue did not have acl information. Local user acl taken from destination queue: '.$singledqueue);
$isrouting = 1;
}
}
}
close QSTATOUTPUT;
# if the acl_user_enable is not defined in the RQ,
# it could be defined in the destination queues.
# we proceed same way as before but on the first
# destination queue to propagate the info to the routing one
if ($isrouting){
debug("Getting acl from destination queue $singledqueue");
# Check that users have access to the queue
unless (open QSTATOUTPUT, "$path/qstat -f -Q $singledqueue 2>/dev/null |") {
error("Error in executing qstat on destination queue: $path/qstat -f -Q $singledqueue");
}
$acl_user_enable = 0;
$more_acls = 0;
while (my $line= <QSTATOUTPUT>) {
chomp $line;
# is this a continuation of the acl line?
if ($more_acls) {
$line =~ s/^\s*//; # strip leading spaces
push @acl_users, split ',', $line;
$more_acls = 0 unless $line =~ /,\s*$/;
next;
}
if ( $line =~ /\s*acl_user_enable/ ) {
my ( $k ,$v ) = split ' = ', $line;
unless ( $v eq 'False' ) {
$acl_user_enable = 1;
}
}
if ( $line =~ /\s*acl_users/ ) {
my ( $k ,$v ) = split ' = ', $line;
unless ( $v eq 'False' ) {
# This condition is kept here in case the reason
# for it being there in the first place was that some
# version or flavour of PBS really has False as an alternative
# to usernames to indicate the absence of user access control
# A Corrallary: Dont name your users 'False' ...
push @acl_users, split ',', $v;
$more_acls = 1 if $v =~ /,\s*$/;
}
}
}
close QSTATOUTPUT;
debug(@acl_users);
}
# acl_users is only in effect when acl_user_enable is true
if ($acl_user_enable) {
foreach my $a ( @{$accts} ) {
if ( grep { $a eq $_ } @acl_users ) {
# The acl_users list has to be sent back to the caller.
# This trick works because the config hash is passed by
# reference.
push @{$$config{acl_users}}, $a;
}
else {
warning("Local user $a does not ".
"have access in queue $qname.");
}
}
} else {
delete $$config{acl_users};
}
# Uses saved module data structure %lrms_queue, which
# exists if queue_info is called before
if ( ! exists $lrms_queue{status} ) {
%lrms_queue = queue_info( $config, $qname );
}
foreach my $u ( @{$accts} ) {
if (exists $$config{scheduling_policy} and
lc($$config{scheduling_policy}) eq "maui") {
my $maui_freecpus;
my $showbf = (defined $$config{maui_bin_path}) ? $$config{maui_bin_path}."/showbf" : "showbf";
if (exists $$config{dedicated_node_string}) {
$showbf.=" -f ".$$config{dedicated_node_string};
}
unless (open SHOWBFOUTPUT, " $showbf -u $u |"){
error("error in executing $showbf -u $u ");
}
while (my $line= <SHOWBFOUTPUT>) {
if ($line =~ /^partition/) {
last;
}
if ($line =~ /no procs available/) {
$maui_freecpus= " 0";
last;
}
if ($line =~ /(\d+).+available for\s+([\w:]+)/) {
$maui_freecpus .= " ".$1.":".&count_time($2);
}
if ($line =~ /(\d+).+available with no timelimit/) {
$maui_freecpus.= " ".$1;
last;
}
}
$lrms_users{$u}{freecpus} = $maui_freecpus;
$lrms_users{$u}{queuelength} = $user_jobs_queued{$u} || 0;
}
else {
$user_jobs_running{$u} = 0 unless $user_jobs_running{$u};
if ($lrms_queue{maxuserrun} and ($lrms_queue{maxuserrun} - $user_jobs_running{$u}) < $lrms_queue{status} ) {
$lrms_users{$u}{freecpus} = $lrms_queue{maxuserrun} - $user_jobs_running{$u};
}
else {
$lrms_users{$u}{freecpus} = $lrms_queue{status};
}
$lrms_users{$u}{queuelength} = "$lrms_queue{queued}";
if ($lrms_users{$u}{freecpus} < 0) {
$lrms_users{$u}{freecpus} = 0;
}
if ($lrms_queue{maxcputime} and $lrms_users{$u}{freecpus} > 0) {
$lrms_users{$u}{freecpus} .= ':'.$lrms_queue{maxcputime};
}
}
}
return %lrms_users;
}
sub nodes_info($) {
my $config = shift;
my $path = $config->{pbs_bin_path};
my %hoh_pbsnodes = read_pbsnodes($path);
my %nodes;
for my $host (keys %hoh_pbsnodes) {
my ($isfree, $isavailable) = (0,0);
$isfree = 1 if $hoh_pbsnodes{$host}{state} =~ /free/;
$isavailable = 1 unless $hoh_pbsnodes{$host}{state} =~ /down|offline|unknown/;
$nodes{$host} = {isfree => $isfree, isavailable => $isavailable};
my $props = $hoh_pbsnodes{$host}{properties};
$nodes{$host}{tags} = [ split /,\s*/, $props ] if $props;
my $np = $hoh_pbsnodes{$host}{np};
$nodes{$host}{slots} = int $np if $np;
my $status = $hoh_pbsnodes{$host}{status};
if ($status) {
for my $token (split ',', $status) {
my ($opt, $val) = split '=', $token, 2;
next unless defined $val;
if ($opt eq 'totmem') {
$nodes{$host}{vmem} = int($1/1024) if $val =~ m/^(\d+)kb/;
} elsif ($opt eq 'physmem') {
$nodes{$host}{pmem} = int($1/1024) if $val =~ m/^(\d+)kb/;
} elsif ($opt eq 'ncpus') {
$nodes{$host}{lcpus} = int $val;
} elsif ($opt eq 'uname') {
my @uname = split ' ', $val;
$nodes{$host}{sysname} = $uname[0];
$nodes{$host}{release} = $uname[2] if @uname > 2;
$nodes{$host}{machine} = $uname[-1] if $uname[-1];
}
}
}
}
return %nodes;
}
1;
|