This file is indexed.

/usr/lib/python2.7/dist-packages/PyMca/SpecFileMcaTable.py is in pymca 4.7.4+dfsg-1build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
#/*##########################################################################
# Copyright (C) 2004-2012 European Synchrotron Radiation Facility
#
# This file is part of the PyMca X-ray Fluorescence Toolkit developed at
# the ESRF by the Software group.
#
# This toolkit is free software; you can redistribute it and/or modify it
# under the terms of the GNU General Public License as published by the Free
# Software Foundation; either version 2 of the License, or (at your option)
# any later version.
#
# PyMca is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
# details.
#
# You should have received a copy of the GNU General Public License along with
# PyMca; if not, write to the Free Software Foundation, Inc.,
# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
#
# PyMca follows the dual licensing model of Riverbank's PyQt and cannot be
# used as a free plugin for a non-free program.
#
# Please contact the ESRF industrial unit (industry@esrf.fr) if this license
# is a problem for you.
#############################################################################*/
import sys
from PyMca import PyMcaQt as qt

QTVERSION = qt.qVersion()

DEBUG = 0

if QTVERSION < '4.0.0':
    import qttable

    class SpecFileMcaTable(qt.QWidget):
        def __init__(self, parent=None, name=None, fl=0):
            qt.QWidget.__init__(self, parent, name, fl)

            self.mainLayout= qt.QVBoxLayout(self)

            self.table= qttable.QTable(self)
            self.table.setSelectionMode(qttable.QTable.Multi)
            self.table.setFocusStyle(qttable.QTable.FollowStyle)
            self.table.setReadOnly(1)
            self.table.verticalHeader().setResizeEnabled(0, -1)
            self.table.horizontalHeader().setResizeEnabled(0, -1)

            # --- selection in case of a single MCA by scan
            self.firstMca= qttable.QTableSelection()
            self.firstMca.init(0, 0)
            self.firstMca.expandTo(0, 0)

            self.mainLayout.addWidget(self.table)

            #self.connect(self.table, qt.SIGNAL("selectionChanged()"), self.__selectionChanged)
            # XXX: do not work correctly anymore !!! (after qt.Qt upgrade)
            self.connect(self.table, qt.SIGNAL("doubleClicked(int,int,int,const QPoint&)"), self.__doubleClicked)
            self.reset()

        #
        # data management
        #
        def setData(self, specfiledata):
            self.data= specfiledata
            self.reset()

        def setDataSource(self, specfiledata):
            self.data= specfiledata
            self.reset()

        def setScan(self, scankey):
            if type(scankey)==type([]):
                if len(scankey): scankey= scankey[0]
                else: scankey=None
            if scankey is None:
                self.reset()
            else:
                self.info= self.data.GetSourceInfo(scankey)
                self.refresh()

        def markMcaSelected(self, mcalist):
            if DEBUG:
                print("markMcaSelected(self, mcalist) called")
                print("mcalist = ",mcalist)
            scankey = ""
            if mcalist != []:
                if len(mcalist):
                    stringsplit=string.split(mcalist[0],".")
                    if len(stringsplit) == 2:
                        scankey = ""
                    else:
                        scankey = stringsplit[0]+"."+stringsplit[1]+"."
                for row in range(self.pts):
                    for col in range(self.det):
                        if ("%s%d.%d" % (scankey,row+1, col+1)) in mcalist:
                            self.table.setText(row, col, "X")
                        else:
                            self.table.setText(row, col, "")
            else:
                for row in range(self.pts):
                    for col in range(self.det):
                       self.table.setText(row, col, "") 
                
        def selectMcaList(self, mcalist):
            for mcano in mcalist:
                self.selectMcaNo(mcano)

        def selectMcaNo(self, mcano):
            (row, col)= self.__getRowCol(mcano)
            selection= qttable.QTableSelection()
            selection.init(row, col)
            selection.expandTo(row, col)
            self.table.addSelection(selection)
            #self.__selectionChanged()

        def selectFirstMca(self):
            self.table.addSelection(self.firstMca)
            #self.__selectionChanged()

        def refresh(self):
            mca= self.info["NbMca"] or 0
            pts= self.info["Lines"] or 0

            if mca==0:
                self.reset()
            else:
                # --- try to compute number of detectors
                if pts>0 and mca%pts==0:
                    self.det= mca/pts
                    self.pts= pts
                else:
                    self.det= mca
                    self.pts= 1

                self.table.setNumCols(self.det)
                self.table.setNumRows(self.pts)
                Hheader= self.table.horizontalHeader()
                for idx in range(self.det):
                    Hheader.setLabel(idx, "mca.%d"%(idx+1), -1)
                    self.table.adjustColumn(idx)

                for row in range(self.pts):
                    for col in range(self.det):
                        self.table.setText(row, col, "")

                #if self.info["Lines"]==pts:
                #    print "AddNorm", self.info["AllLabels"]

                if mca==1:
                    self.selectFirstMca()

        def clear(self):
            self.table.clearSelection(1)

        def reset(self):
            self.table.clearSelection(1)
            self.table.setNumCols(1)
            self.table.setNumRows(0)
            self.table.horizontalHeader().setLabel(0, "NO MCA for the selected scan", -1)
            self.table.adjustColumn(0)
            self.det= 0
            self.pts= 0

        def getSelection(self):
            if self.det==0:    return []
            selection= []
            for row in range(self.pts):
                for col in range(self.det):
                    if self.table.isSelected(row, col):
                        #selection.append("%s.%d"%(self.info["Key"], self.__getMcaNo(row,col)))
                        selection.append("%s.%d.%d"%(self.info["Key"], row+1,col+1))
                    elif self.table.text(row, col) != "":
                        selection.append("%s.%d.%d"%(self.info["Key"], row+1,col+1))

            return selection

        def getCurrentlySelectedMca(self):
            if self.det==0:    return []
            selection= []
            for row in range(self.pts):
                for col in range(self.det):
                    if self.table.isSelected(row, col):
                        #selection.append("%s.%d"%(self.info["Key"], self.__getMcaNo(row,col)))
                        selection.append("%d.%d" %(row+1,col+1))
            return selection

        def getSelectedMca(self):
            if self.det==0:    return []
            selection= []
            for row in range(self.pts):
                for col in range(self.det):
                    if self.table.isSelected(row, col):
                        #selection.append("%s.%d"%(self.info["Key"], self.__getMcaNo(row,col)))
                        selection.append("%d.%d" %(row+1,col+1))
                    elif self.table.text(row, col) != "":
                        selection.append("%d.%d"%(row+1,col+1))
            return selection

        #
        # signal / slot handling
        #
        def __selectionChanged(self):
            if self.det==0: return
            else:
                self.emit(qt.PYSIGNAL("mcaSelection"), (self.getSelection,))

        def __doubleClicked(self, *args):
            #self.emit(qt.PYSIGNAL("mcaDoubleClicked"), (["%s.%d"%(self.info["Key"], self.__getMcaNo(args[0], args[1]))],))
            self.emit(qt.PYSIGNAL("mcaDoubleClicked"), (["%s.%d.%d"%(self.info["Key"], args[0]+1, args[1]+1)],))

        #
        # (mcano) <--> (row,col) operations
        #
        def __getMcaNo(self, row, col):
            return (row*self.det+col+1)

        def __getRowCol(self, mcano):
            mcano= mcano-1
            row= int(mcano/self.det)
            col= mcano-(row*self.det)
            return (row, col)


else:
    class SpecFileMcaTable(qt.QWidget):
        def __init__(self, parent=None):
            qt.QWidget.__init__(self, parent)
            self.l = qt.QVBoxLayout(self)
            self.table= qt.QTableWidget(self)
            self.table.setColumnCount(1)
            self.table.setRowCount(0)

            item = self.table.horizontalHeaderItem(0)
            if item is None:
                item = qt.QTableWidgetItem("No MCA for the selected scan",
                                               qt.QTableWidgetItem.Type)

            self.table.setHorizontalHeaderItem(0,item)
            self.table.resizeColumnToContents(0)
            self.table.setEditTriggers(qt.QAbstractItemView.NoEditTriggers)
            self.table.setSelectionMode(qt.QAbstractItemView.MultiSelection)
            self.l.addWidget(self.table)

            #self.connect(self.table,
            #             qt.SIGNAL("cellActivated( int, int)"),
            #             self._cellActivated)
            self.connect(self.table,
                         qt.SIGNAL("cellClicked(int, int)"),
                         self._cellClicked)
            self.connect(self.table,
                         qt.SIGNAL("cellDoubleClicked(int, int)"),
                         self._cellDoubleClicked)
            
            self.table._hHeader = self.table.horizontalHeader()
            self.connect(self.table._hHeader,
                     qt.SIGNAL('sectionClicked(int)'),
                     self._horizontalHeaderClicked)
            self.table._hHeader.menu = qt.QMenu()
            self.table._hHeader.menu.addAction('ADD Image')
            self.table._hHeader.menu.addAction('REMOVE Image')
            self.table._hHeader.menu.addAction('REPLACE Image')
            self.table._hHeader.menu.addAction('ADD Stack')

        def _horizontalHeaderClicked(self, value):
            if value < 0:
                return
            item = self.table.horizontalHeaderItem(value)
            text = str(item.text())
            if text.startswith("No MCA for"):
                return
            action = self.table._hHeader.menu.exec_(self.cursor().pos())
            if action is None:
                return
            txt = str(action.text())
            ddict = {}
            ddict['event'] = 'McaDeviceSelected'
            ddict['mca']   = value
            ddict['action'] = txt
            self.emit(qt.SIGNAL("McaDeviceSelected"), ddict)

        def build(self, info):
            if info['NbMca'] > 0:
                ncol = int(info['NbMcaDet'])
            else:
                ncol = 1
            nrow = info['NbMca']/ncol
            self.table.setColumnCount(ncol)
            self.table.setRowCount(nrow)
            if nrow == 0:
                item = self.table.horizontalHeaderItem(0)
                item.setText("No MCA for the selected scan")
                self.table.resizeColumnToContents(0)
                return

            for c in range(ncol):
                text = "Mca %d" % (c+1)
                item = self.table.horizontalHeaderItem(c)
                if item is None:
                    item = qt.QTableWidgetItem(text,
                                               qt.QTableWidgetItem.Type)
                    self.table.setHorizontalHeaderItem(c,item)
                else:
                    item.setText(text)
                self.table.resizeColumnToContents(c)
            if nrow == 1:
                if ncol == 1:
                    item = self.table.item(0, 0)
                    if item is None:
                        item = qt.QTableWidgetItem('',
                                qt.QTableWidgetItem.Type)
                        self.table.setItem(0, 0, item)
                    self.table.setItemSelected(item, True)

        def _toggleCell(self, row, col):
            item = self.table.item(row, col)
            if item is None:
                item = qt.QTableWidgetItem('X',
                    qt.QTableWidgetItem.Type)
                self.table.setItem(row, col, item)
                return
            text = str(item.text())
            if text == "X":
                item.setText("")
            else:
                item.setText("X")

        def _cellClicked(self, row, col):
            if DEBUG:
                print("_cellClicked %d %d " % (row, col))
            item = self.table.item(row, col)
            if item is None:
                item = qt.QTableWidgetItem('',qt.QTableWidgetItem.Type)
                self.table.setItem(row, col, item)

        def _cellDoubleClicked(self, row, col):
            if DEBUG:
                print("_cellDoubleClicked %d %d" % (row, col))
            #self._toggleCell(row, col)
            pass

        def getCurrentlySelectedMca(self):
            mca = []
            for item in self.table.selectedItems():
                row = self.table.row(item)
                col = self.table.column(item)
                mca.append("%d.%d" % (row+1, col+1))
            return mca

        def getSelectedMca(self):
            mca = self.getCurrentlySelectedMca() # They may be not X marked
            for r in range(self.table.rowCount()):
                for c in range(self.table.ColumnCount()):
                    item = self.table.item(r, c)
                    if item is not None:
                        text = str(item.text)
                        if text == "X":
                            new = "%d.%d" % (r+1, c+1)
                            if new not in mca:
                                mca.append(new)
            return mca

        def setSelectedMca(self, mcalist):
            for r in range(self.table.rowCount()):
                for c in range(self.table.columnCount()):
                    item = self.table.item(r, c)
                    new = "%d.%d" % (r+1, c+1)
                    if item is not None:
                        if new not in mcalist:
                            item.setText("")
                        else:
                            item.setText("X")
                    else:
                        if new in mcalist:
                            self._toggleCell(r, c)

def test():
    import sys
    from PyMca import SpecFileLayer
    app = qt.QApplication([])
    tab = SpecFileMcaTable()
    d = SpecFileLayer.SpecFileLayer()
    if len(sys.argv) > 1:
        d.SetSource(sys.argv[1])
    else:
        d.SetSource('03novs060sum.mca')
    info, data = d.LoadSource('1.1')
    tab.build(info)
    tab.setSelectedMca(["1.1"])
    tab.show()
    app.exec_()

if __name__ == "__main__":
    test()