/usr/lib/python2.7/dist-packages/pysam/cvcf.pxd is in python-pysam 0.7.7-1ubuntu1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 | cdef extern from "stdlib.h":
void free(void *)
void *malloc(size_t)
void *calloc(size_t,size_t)
void *realloc(void *,size_t)
int c_abs "abs" (int)
int c_abs "abs" (int)
int atoi( char *nptr)
long atol( char *nptr)
double atof( char *nptr)
cdef extern from "Python.h":
ctypedef struct FILE
FILE* PyFile_AsFile(object)
char *fgets(char *str, int size, FILE *ifile)
int feof(FILE *stream)
size_t strlen(char *s)
size_t getline(char **lineptr, size_t *n, FILE *stream)
char *strstr(char *, char *)
char *strchr(char *string, int c)
int fileno(FILE *stream)
cdef extern from "string.h":
int strcmp(char *s1, char *s2)
int strncmp(char *s1,char *s2,size_t len)
char *strcpy(char *dest,char *src)
char *strncpy(char *dest,char *src, size_t len)
char *strdup(char *)
char *strcat(char *,char *)
size_t strlen(char *s)
int memcmp( void * s1, void *s2, size_t len )
void *memcpy(void *dest, void *src, size_t n)
void *memchr(void *s, int c, size_t n)
cdef extern from "stdint.h":
ctypedef int int64_t
ctypedef int int32_t
ctypedef int uint32_t
ctypedef int uint8_t
ctypedef int uint64_t
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