/usr/lib/R/site-library/ is in r-bioc-rsamtools 1.22.0-1.
This file is owned by root:root, with mode 0o755.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
..
|
||||
/usr/lib/R/site-library/Rsamtools/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/DESCRIPTION
|
text/plain | root:root | 0o644 | 1.5 KB |
/usr/lib/R/site-library/Rsamtools/INDEX
|
text/plain | root:root | 0o644 | 2.1 KB |
/usr/lib/R/site-library/Rsamtools/Meta/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/Meta/Rd.rds
|
application/gzip | root:root | 0o644 | 3.1 KB |
/usr/lib/R/site-library/Rsamtools/Meta/hsearch.rds
|
application/gzip | root:root | 0o644 | 3.2 KB |
/usr/lib/R/site-library/Rsamtools/Meta/links.rds
|
application/gzip | root:root | 0o644 | 2.3 KB |
/usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds
|
application/gzip | root:root | 0o644 | 738 bytes |
/usr/lib/R/site-library/Rsamtools/Meta/package.rds
|
application/gzip | root:root | 0o644 | 1.5 KB |
/usr/lib/R/site-library/Rsamtools/Meta/vignette.rds
|
application/gzip | root:root | 0o644 | 284 bytes |
/usr/lib/R/site-library/Rsamtools/NAMESPACE
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Rsamtools/NEWS
|
text/plain | root:root | 0o644 | 12.3 KB |
/usr/lib/R/site-library/Rsamtools/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/R/Rsamtools
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb
|
application/octet-stream | root:root | 0o644 | 382.6 KB |
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx
|
application/gzip | root:root | 0o644 | 6.0 KB |
/usr/lib/R/site-library/Rsamtools/doc/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R
|
text/plain | root:root | 0o644 | 9.4 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rnw
|
text/x-tex | root:root | 0o644 | 19.4 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.pdf
|
application/pdf | root:root | 0o644 | 137.6 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.R
|
text/plain | root:root | 0o644 | 221 bytes |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw
|
text/x-c | root:root | 0o644 | 3.9 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf
|
application/pdf | root:root | 0o644 | 84.2 KB |
/usr/lib/R/site-library/Rsamtools/doc/index.html
|
text/html | root:root | 0o644 | 1.9 KB |
/usr/lib/R/site-library/Rsamtools/extdata/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa
|
text/plain | root:root | 0o644 | 176 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai
|
text/plain | root:root | 0o644 | 112 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam
|
application/gzip | root:root | 0o644 | 123.6 KB |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai
|
application/octet-stream | root:root | 0o644 | 176 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf
|
application/gzip | root:root | 0o644 | 72.9 KB |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.bci
|
application/gzip | root:root | 0o644 | 77 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.sam
|
text/plain | root:root | 0o644 | 546.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz
|
application/gzip | root:root | 0o644 | 3.7 KB |
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi
|
application/gzip | root:root | 0o644 | 259 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam
|
application/gzip | root:root | 0o644 | 348 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai
|
application/octet-stream | root:root | 0o644 | 96 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam
|
text/plain | root:root | 0o644 | 368 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam
|
application/gzip | root:root | 0o644 | 203 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai
|
application/octet-stream | root:root | 0o644 | 176 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.sam
|
text/plain | root:root | 0o644 | 240 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam
|
application/gzip | root:root | 0o644 | 198 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam.bai
|
application/octet-stream | root:root | 0o644 | 176 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.sam
|
text/plain | root:root | 0o644 | 168 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda
|
application/gzip | root:root | 0o644 | 1.6 MB |
/usr/lib/R/site-library/Rsamtools/extdata/pileup.txt
|
text/plain | root:root | 0o644 | 135.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/querybins.bam
|
application/gzip | root:root | 0o644 | 181 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/querybins.bam.bai
|
application/octet-stream | root:root | 0o644 | 96 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/querybins.sam
|
text/plain | root:root | 0o644 | 117 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/revbins.bam
|
application/gzip | root:root | 0o644 | 381 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/revbins.bam.bai
|
application/octet-stream | root:root | 0o644 | 416 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/revbins.sam
|
text/plain | root:root | 0o644 | 770 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt
|
text/plain | root:root | 0o644 | 31 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt
|
text/plain | root:root | 0o644 | 2.7 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam
|
application/gzip | root:root | 0o644 | 333 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam.bai
|
application/octet-stream | root:root | 0o644 | 656 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/tagfilter.sam
|
text/plain | root:root | 0o644 | 804 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/tiny.bam
|
application/gzip | root:root | 0o644 | 1.1 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tiny.bam.bai
|
application/octet-stream | root:root | 0o644 | 2.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tiny.sam
|
text/plain | root:root | 0o644 | 4.0 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/extdata/tophat/README
|
text/plain | root:root | 0o644 | 36 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam
|
text/plain | root:root | 0o644 | 35.2 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig
|
text/plain | root:root | 0o644 | 4.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed
|
text/plain | root:root | 0o644 | 196 bytes |
/usr/lib/R/site-library/Rsamtools/help/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/help/AnIndex
|
text/plain | root:root | 0o644 | 11.1 KB |
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb
|
application/octet-stream | root:root | 0o644 | 167.0 KB |
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx
|
application/gzip | root:root | 0o644 | 766 bytes |
/usr/lib/R/site-library/Rsamtools/help/aliases.rds
|
application/gzip | root:root | 0o644 | 2.4 KB |
/usr/lib/R/site-library/Rsamtools/help/paths.rds
|
application/gzip | root:root | 0o644 | 369 bytes |
/usr/lib/R/site-library/Rsamtools/html/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/html/00Index.html
|
text/html | root:root | 0o644 | 39.9 KB |
/usr/lib/R/site-library/Rsamtools/html/R.css
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Rsamtools/include/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/samtools/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/samtools/bam.h
|
text/x-c | root:root | 0o644 | 25.2 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bam_endian.h
|
text/x-c | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/bcf.h
|
text/x-c | root:root | 0o644 | 7.1 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/prob1.h
|
text/x-c | root:root | 0o644 | 1.4 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bgzf.h
|
text/x-c | root:root | 0o644 | 6.2 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/faidx.h
|
text/x-c | root:root | 0o644 | 4.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kaln.h
|
text/x-c | root:root | 0o644 | 2.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/khash.h
|
text/x-c | root:root | 0o644 | 17.4 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/knetfile.h
|
text/x-c | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kprobaln.h
|
text/x-c | root:root | 0o644 | 1.5 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kseq.h
|
text/x-c | root:root | 0o644 | 8.6 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/ksort.h
|
text/x-c | root:root | 0o644 | 10.1 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kstring.h
|
text/x-c | root:root | 0o644 | 4.4 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/razf.h
|
text/x-c | root:root | 0o644 | 4.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/sam.h
|
text/x-c | root:root | 0o644 | 2.6 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/sam_header.h
|
text/x-c | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/tabix/bgzf.h
|
text/x-c | root:root | 0o644 | 6.2 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/knetfile.h
|
text/x-c | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/kstring.h
|
text/x-c | root:root | 0o644 | 4.4 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/tabix.h
|
text/x-c | root:root | 0o644 | 4.6 KB |
/usr/lib/R/site-library/Rsamtools/libs/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so
|
application/x-sharedlib | root:root | 0o644 | 465.1 KB |
/usr/lib/R/site-library/Rsamtools/scripts/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/scripts/BamViews-1000g.R
|
text/plain | root:root | 0o644 | 2.9 KB |
/usr/lib/R/site-library/Rsamtools/scripts/features.R
|
text/plain | root:root | 0o644 | 998 bytes |
/usr/lib/R/site-library/Rsamtools/scripts/remote_test.R
|
text/plain | root:root | 0o644 | 763 bytes |
/usr/lib/R/site-library/Rsamtools/scripts/update-samtools.sh
|
text/x-shellscript | root:root | 0o755 | 997 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/unitTests/cases/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1.sam.gz
|
application/gzip | root:root | 0o644 | 111.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_noindex.bam
|
application/gzip | root:root | 0o644 | 123.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam
|
application/gzip | root:root | 0o644 | 41.0 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai
|
application/octet-stream | root:root | 0o644 | 72 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_unsort.bam
|
application/gzip | root:root | 0o644 | 151.8 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai
|
application/x-empty | root:root | 0o644 | 0 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf
|
text/plain | root:root | 0o644 | 1020 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_header_line.vcf
|
text/plain | root:root | 0o644 | 807 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/pileup-no-stars.txt
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam
|
application/gzip | root:root | 0o644 | 246 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam.bai
|
application/octet-stream | root:root | 0o644 | 96 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamFile.R
|
text/plain | root:root | 0o644 | 10.7 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamViews.R
|
text/plain | root:root | 0o644 | 5.7 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BcfFile.R
|
text/plain | root:root | 0o644 | 3.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_FaFile.R
|
text/plain | root:root | 0o644 | 2.8 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_TabixFile.R
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_applyPileups.R
|
text/plain | root:root | 0o644 | 6.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_asBam.R
|
text/plain | root:root | 0o644 | 549 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam.R
|
text/plain | root:root | 0o644 | 11.7 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_count.R
|
text/plain | root:root | 0o644 | 1.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_header.R
|
text/plain | root:root | 0o644 | 304 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_compression.R
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_mapqfilter.R
|
text/plain | root:root | 0o644 | 832 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_nowhich.R
|
text/plain | root:root | 0o644 | 5.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_querybins.R
|
text/plain | root:root | 0o644 | 14.5 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_revbins.R
|
text/plain | root:root | 0o644 | 18.3 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_single_range.R
|
text/plain | root:root | 0o644 | 51.0 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R
|
text/plain | root:root | 0o644 | 343 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R
|
text/plain | root:root | 0o644 | 710 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_tagfilter.R
|
text/plain | root:root | 0o644 | 3.5 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_testPairedEndBam.R
|
text/plain | root:root | 0o644 | 183 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_utilities.R
|
text/plain | root:root | 0o644 | 392 bytes |
/usr/lib/R/site-library/Rsamtools/usrlib/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/usrlib/libbam.a
|
application/x-archive | root:root | 0o644 | 279.4 KB |
/usr/lib/R/site-library/Rsamtools/usrlib/libbcf.a
|
application/x-archive | root:root | 0o644 | 114.9 KB |
/usr/lib/R/site-library/Rsamtools/usrlib/libtabix.a
|
application/x-archive | root:root | 0o644 | 93.1 KB |