/usr/lib/R/site-library/MALDIquant/NAMESPACE is in r-cran-maldiquant 1.12-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 | import("methods")
importFrom("parallel",
"mclapply",
"mcmapply")
importFrom("graphics",
"lines",
"plot",
"points")
importFrom("stats",
"filter",
"mad",
"supsmu")
importFrom("utils",
"packageVersion")
exportClasses("MassPeaks",
"MassSpectrum")
export("alignSpectra",
"averageMassSpectra",
"binPeaks",
"createMassPeaks",
"createMassSpectrum",
"determineWarpingFunctions",
"filterPeaks",
"findEmptyMassObjects",
"intensityMatrix",
"isMassPeaks",
"isMassPeaksList",
"isMassSpectrum",
"isMassSpectrumList",
"mergeMassPeaks",
"msiSlices",
"plotImsSlice",
"referencePeaks",
"removeEmptyMassObjects",
"warpMassPeaks",
"warpMassSpectra")
exportMethods("as.matrix",
"calibrateIntensity",
"coordinates",
"coordinates<-",
"detectPeaks",
"estimateBaseline",
"estimateNoise",
"intensity",
"intensity<-",
"isEmpty",
"isRegular",
"labelPeaks",
"length",
"lines",
"mass",
"mass<-",
"metaData",
"metaData<-",
"plot",
"plotMsiSlice",
"points",
"removeBaseline",
"smoothIntensity",
"snr",
"totalIonCurrent",
"transformIntensity",
"trim")
useDynLib("MALDIquant")
|