/usr/include/libphylo/geneticCodeHolder.h is in rate4site 3.0.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | // $Id: geneticCodeHolder.h 962 2006-11-07 15:13:34Z privmane $
#ifndef ___GENMATRIXHOLDER
#define ___GENMATRIXHOLDER
#include <string>
using namespace std;
// THIS CONSTRUCT IS USED TO KEEP A STRING THAT IS THE AA SUBSTITUTION MATRIX
// THE datMatrixString IS TO BE USED WHENEVER WE USE ONE OF THE BUILD-IN AA SUBSTITUTION MATRICES.
class geneticCodeString {
public:
const string Val;
explicit geneticCodeString(const char * str): Val(str){};
};
class geneticCodeHolder {
public:
static const geneticCodeString nuclearStandard;
static const geneticCodeString nuclearEuplotid;
static const geneticCodeString nuclearCiliate;
static const geneticCodeString nuclearBlepharisma;
static const geneticCodeString mitochondriaYeast;
static const geneticCodeString mitochondriaVertebrate;
static const geneticCodeString mitochondriaProtozoan;
static const geneticCodeString mitochondriaInvertebrate;
static const geneticCodeString mitochondriaFlatworm;
static const geneticCodeString mitochondriaEchinoderm;
static const geneticCodeString mitochondriaAscidian;
};
#endif // ___GENMATRIXHOLDER
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