/usr/include/libphylo/nuclearBlepharisma.code is in rate4site 3.0.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | "A GCT GCC GCA GCG "
"R CGT CGC CGA CGG AGA AGG "
"N AAT AAC "
"D GAT GAC "
"C TGT TGC "
"Q CAA CAG TAG "
"E GAA GAG "
"G GGT GGC GGA GGG "
"H CAT CAC "
"I ATT ATC ATA "
"L CTT CTC CTA CTG TTA TTG "
"K AAA AAG "
"M ATG "
"F TTT TTC "
"P CCT CCC CCA CCG "
"S TCT TCC TCA TCG AGT AGC "
"T ACT ACC ACA ACG "
"W TGG "
"Y TAT TAC "
"V GTT GTC GTA GTG "
"* TAA TGA "
"i ATG "
"### taken from http://bioinformatics.org/JaMBW/2/3/TranslationTables.html "
"### NOTE: initiation codons must appear after all codon lines "
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