/usr/include/libphylo/pijAccelerator.h is in rate4site 3.0.0-2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 | // $Id: pijAccelerator.h 962 2006-11-07 15:13:34Z privmane $
#ifndef ___PIJ_ACCELERATOR
#define ___PIJ_ACCELERATOR
#include "definitions.h"
#include "replacementModel.h"
class pijAccelerator {
public:
virtual pijAccelerator* clone() const = 0;
virtual ~pijAccelerator() = 0;
virtual const MDOUBLE Pij_t(const int i, const int j, const MDOUBLE t) const = 0;
virtual const MDOUBLE freq(const int i) const = 0; // P(i)
virtual const MDOUBLE dPij_dt(const int i, const int j, const MDOUBLE t) const =0;
virtual const MDOUBLE d2Pij_dt2(const int i, const int j, const MDOUBLE t) const =0;
virtual replacementModel* getReplacementModel() const =0; // @@@@ this const is a lie !!!
virtual const int alphabetSize() const =0;
};
#endif
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